RnoINT0109410 @ rn6
Intron Retention
Gene
ENSRNOG00000048849 | Pdss1
Description
decaprenyl diphosphate synthase subunit 1 [Source:RGD Symbol;Acc:2319976]
Coordinates
chr17:90065875-90066476:-
Coord C1 exon
chr17:90066412-90066476
Coord A exon
chr17:90065996-90066411
Coord C2 exon
chr17:90065875-90065995
Length
416 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGTACATTTCCATTCACCAGGTT
3' ss Score
7.14
Exon sequences
Seq C1 exon
ATACCCTATTTTAGTCTTTTGAAGATTTTAACATCTGCCTCCCCAAATATGCATAGTATATCGCA
Seq A exon
GTAAGTTTATAATCCTTATTAGAGCTACAAAGATAATCACTGCTAGTAAACTTCTATTCTAATTTTCATTAGGCTAGGCTAACACAATGTTTAAGTATAAGGCACAGTAGTCTTCTTCAGATGATCTTTGCCATTTCAGAACATATGACTATAGTAAAATTTGAGTTCTACTCAGAGTACAATAAACATATAATACAGTCTTTTTCTGATGTTGGCTGTCAAGATCCTATTCATGAAAATCACCTATTGATATATTATTTAGCAAGATTAGAATTCTGTATGTGTTTTTGAATTATGGTGACCTTTGCAGATTTGTATTTGATTTCTAGCAAGTTGGCTTCATTTTTTTCCACCATATAAATATTTATGTGTTTGAATTACTTGAAAATGGAGTTGTGTACATTTCCATTCACCAG
Seq C2 exon
GTTTCATCAAAGGACACCAGCAATGTGCTGTTGTAGTCAAACTCAGAGTGGTGAGAAATACAGTGATCCTTTTAAACTTGGCTGGAGAGACTTGAAAGGTCTATATGAAGACATTAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048849:ENSRNOT00000071978:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]