DreINT0114194 @ danRer10
Intron Retention
Gene
ENSDARG00000060841 | pik3c2a
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha [Source:ZFIN;Acc:ZDB-GENE-030328-39]
Coordinates
chr18:27072469-27075494:+
Coord C1 exon
chr18:27072469-27072649
Coord A exon
chr18:27072650-27075389
Coord C2 exon
chr18:27075390-27075494
Length
2740 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCAGTGTTTGTTCTTTTTAGGTG
3' ss Score
10.91
Exon sequences
Seq C1 exon
GCTGCTGAGGGATGCAGTGCAGGACCCGGCGTTTGGTCAGCGTTATGAGCGGATCCTCTGTGTGCTGCTGTGTCTGTGTGGGACCGGACTGAGGGCTGAGCTGGAGAAGCAGACCCGACTTGTGCAGCTGCTTGGAGCTCTGGCTGAAAAGGTTCGGCAGGCGAGCAGCTCAACCCGACAG
Seq A exon
GTAAACCAGGTCTACTCTACAATTAATGTGGGAATTGTGGTTGTATTTTGTAATGTTATTTCTAACATTTACATGTCTACAATACTGTTCAAAAGTTAGGTTCTGATATACTGTTTTGGTGCTTTTTATTTATTTATTCTTTTTTGGTGTTGATTTTGATGAATAGAATATTCAACAATTTTTTTTAAATAGATTTGCTGCTTTTTTGTTGTTTTAGTTTTTTATAACCAGTATATACTGAGGAGTCCAAACCAAAGACTTCTGGGAAACAAGAAAAACAATTTCTAAATTGCTCCTAGTTCCAAAATCTAATTGAATAATGCTGTTCAAAACATGATCTGAATAAACATAAGCATAAGTATATCAGGAATCTCATGTTTGCTTTTCTGCGTTTTTCTTTTCTTTGGGGTTTCAACAAAGTTTCAAGCAAAACATTTACAAGTATTTTTCTCACAAGCGTGACTGATTTTTGGATCAGTGGATGAACCCTTGAACCATATGCCTCATCCAGTCAATACTGATATCATGTTAACTTAGCAGGATACTCTATATGTCAAATATATGGCAACCCAAATGCCACACCTATACAGACATGTCAAGAATTTTATTAGAGAACTGCAGTTTTAATAATATTATTGGTGCTGGGCAAAAATTTGTTATTTAATTACATCCAAAATAAAAGTTTGTTTTGACTTAATAAATATACACAGCACACACACATATTTTAAGTATGCATAAATACACACATGCATGCATATATTTAAGAGACACCTTATTTATATTTAGATATAAATGGATATCAGAACAACTTATGTGGAAGTTTAAATATCTATATCTATCTAAATAAATATCTAAATATATATATATATATATATATATATATATATATATATATATATCGGCTATCTGTGAATTGGATAATCTAAATTGGCCGTAGTTTATGAGTGCATGTGTGAGTGCAAGAGTGTATTGGTGTTTCCCAGTACTGGGTTTTGGCTGGAAGGGCATCTGCTGCTTAAAACATATGCTGGAAAAGTTGGCGGTTCATTCTGCTGTGGTGACCCCTGATAAATAAAGGACTAAGCTGAATGAAAAATTTATGAATGAATAATCTTTGCTCAGCACAAAATATTATGTAAAATTAATGTTTTGTTTTTATGTGATTTGGTACATTTACCTTAGATCCTGAAACAAATTTCCCTCAGGCACAATACAGCATACCTTAAACTTAACCATTATTTCTGAAATTGGAACCATTCACGACAGCACTTTATCTGCATCATTCCAAATGTGTTTAGACTTGTGTTTTGAAGAGTCCAGTAAATTGCTTAGCATCTGACTTTGTGCTTTCTTTTTGGAATAGAAAACAGTCCTTCCCATATGGCTGCCACAAAGTGGGATATGCGTAATTCTCAAGAGTGTCATTGTATTCTGTAGCATTAAGATCTGTCTTGCCTGGAATTAAAGGATTGTGCCAAGCATGCTATTAGAAGGGGGTGGGCCACATACTTTTGGTCCTATAGTGCCTCAACTTATGTCTCCCATGTGTATAAGTGGTTTAAATACAAATGGATAGCTCTGGAAAGCTTTTAATTACTAAACTTGTAAACACATTTTATTGCATTATTTCTTTGTCTGTCTTGGCTAAATGGAGTTCTCCGGAAATGACTCCAAGAAACTATTGAATGTTTTTGTACTTCCCGTTTCATTGTCTGAAGTCACTGGATTTCTATTCAATGATTTTTGTTTTTCAATGCCTGGAATAAATTTTTTTTTTCTGCAAACAAAAACTAACAATAATGAAGTGCAATAGTAAAAAAGCGCAAAGTGTTGTTTTTAATTTTACAACTTCATTGTACAAAACATTTAGTCCCACTTTTTATTAGGGGGGCATTGTACAATACAATGTACTTAATAACGTATTGCAGAAGATGTTTGGTGCTCTTGTAGTGGGATACAGGTAGGGTTAGGGACAGGTTTGGTAGAATGGGTAGGTTTAAGGGTGGGTCAACGGTGTAATTACAAATGTATTTAAAGAAAGTAATTACCGATGTAATTACATGCAGGTAATAAATCATCAATTCATCAGTACAAAGTAAAAGCATGTATTTACACAGTTTGTACATTCTAACATGATAATTTTAGTGAAAGTACATATTAGATAAACGTGTATATTTGATAAATGTGTAGATAAATTGGTATATTAGTAAAATGGGACACAAAATCAGCCAATATGTGGTGGCAAGTCTCTCTTTTAATGAGTGATTGATTGAATTGTTAATTCAAAAAATGTCTTCCAAATGGTCATTCATTTAGACACGAGAAAGGACTTCTTTTCACACTTTTCATTTAAAGTCATTTTTCTTGAAGAAAGAAGTGTTGCTCAGATGCACTAACATTTCTCTTCTGGATTTCAGAAGTCAGCTTCTTGTTAACAGTTAACGTTAAATGTTAACTTCTTGTAATCAATATCATATCTGTTATTGATTTTGTAATATTGCTCAACTATACTGTATTGTAAATGTCAAGGATTTGAATTGCCACACACTGTGTGCATGTGTAAGTTCACATTTCTTGGTGACCTAAATCAAAACAAGAATTAAGAATATTTAGCTTTTTTTTTATTTTTTATTTAAAAGCCTTTGTTTTCTAATCGTCTCTGTGGTGCTCTATGGTTGAGGAAATCCAGATGCAGTCTTGCGCTGCTTCATTTTTCAATCTCAGTGTTTGTTCTTTTTAG
Seq C2 exon
GTGGTTCTCCTCGAGGGTCTAGAGAGGGTTCAGTCTTTCTTCCAGAAGAACAGCTGTCGACTCCCTATTAGCCCCAGTCTGGTGGCAAAAGAGCTCAATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060841:ENSDART00000133547:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(18.8=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]