GgaINT0059926 @ galGal3
Intron Retention
Gene
ENSGALG00000006121 | PIK3C2A
Description
NA
Coordinates
chr5:12857997-12858883:-
Coord C1 exon
chr5:12858703-12858883
Coord A exon
chr5:12858102-12858702
Coord C2 exon
chr5:12857997-12858101
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTTTGTTTGATTGTTTGCAGACT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GCTTCTTAAGGATACATTATATGATCCAAAGTTTGGCGTAAGATACGAGCAAATTCTTGGAGCCTTTCTTTCAGTCTGTGGGAAAGGGCTAAGAGAAGAGTTGGAGAAGCAGACCAGACTGGTGCTGCTTTTTGGAATGGTAGCAGAAAAAGTAAAGCAAACAAGTGTATCAGGTCGACAG
Seq A exon
GTACGTATATTAAATTTTAGTATTGTTAAAGAAGATAAAACCGGGTATGCTCTCAAAGCAAATTCACTCAGTTATCTTTTTAGTCTAAATTTGATAAAATGATATATATATAATATATAGAAAGATCTGTGAGTCTGCCTTCTAGCAAGCTAATGGGTTAAATAAATCAATGTCTGTCAAATTTGTTGTCAATTGAAGCATAAGATTGTATGAGGTGATGGGGTAAGAAAGAAGGATGATTTCTGTGTATGATAAGCTGGATGTGGATTTAAAGCTATTACTGCTGAAGAATGATCCAGTTATGCGAAAGAATGGGATATCTATTTATATGCTAATAATGAGTTAACATTTTGATACAGTGGAATGCTACCATCTGTTTTAGTAAAAAAAAAAAAAAAAAAGTGTGGTATTCGTATTGTACTGCTAAGTTTATACATTTTTAATAAGTAAAACAGCAGTTGTAACTTCTTTTGATTCCTTTGGTGCTGAGAAGCTAAAATACTGGCTGTAATATGTTTCAGGATAACTTTGCCCAGAAGTTTCCCGTAGATGCTCCAGTTAGGAATTATCAGCTGAATTTTTTTTGTTTGATTGTTTGCAG
Seq C2 exon
ACTGCCTTACAAAGTGGGATGGAACGTGTGCAGTCATTTTTCTTGAAGAACAAATGCCGTTTGCCTCTCAATCCCAGTCTTGTGGCAAAAGAACTAAATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006121:ENSGALT00000009877:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(19.0=57.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGATACGAGCAAATTCTTGGAGC
R:
GTTCTTTTGCCACAAGACTGGG
Band lengths:
238-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]