HsaINT0124922 @ hg38
Intron Retention
Gene
ENSG00000011405 | PIK3C2A
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha [Source:HGNC Symbol;Acc:HGNC:8971]
Coordinates
chr11:17114361-17117671:-
Coord C1 exon
chr11:17117491-17117671
Coord A exon
chr11:17114466-17117490
Coord C2 exon
chr11:17114361-17114465
Length
3025 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TATCACATCTCTTTCTATAGGTT
3' ss Score
10.37
Exon sequences
Seq C1 exon
GCTTCTCAAAGATGCCCTGCATGATGTACAGTTTAGTACCCGATACGAACATGTTTTGGGTGCTCTCCTGTCAGTAGGAGGAAAACGACTTAGAGAAGAACTTCTAAAACAGACGAAACTTGTACAGCTTTTAGGAGGAGTAGCAGAAAAAGTAAGGCAGGCTAGTGGATCAGCCAGACAG
Seq A exon
GTATGTACCCATAAAAGGTAATATAAATGTGTTAATGTTAAAGGAAGGATCTTTATGGTGCTGACTAATTAAGTTGCTATTCTTTATTGGTAGACTCCCAGTAGAACTCTAACTATACCCATGCTATTTGGGGCAGATAAATTCAAAGATTGTTTAAAATATATAGGAACATATTTCACAACCTATTAAAATCAGTGATTTTCCCATGCTTATTTATTTCCATGCTTATTTATTCCTTTCTGATGAAAATTGTTTTCTTGAATTCCTTTACCTCCACTATCAAAGTCCACAGTATTTTCATCACACCAAAAAGAAAGCATGTCCCCATTTTCCCCTCCCAGCCACTAAACTGTTTTCTGTCAATATGGATACGTCTATACTTCTATATGGATATTCTGGACACTTCATGGACTTTTCTGTCTAGTTTCTTTCACTTAGCATAAAGTTTTCAGAGTTCATCTGTGTTCTAGCATGTGTACTACATGCCATTTTTGGTTGAATAATATTCCATTGTGTGGATATACCACATTTGGTTTAAACATTCATCAGTTGGTGGACATTTGGGTTGTTTCCACTTTTTGACTATTAATAATAATACTGCTGGCCAGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCCAGGCGGGCAGATCACGAGGTCAGGAGATCGAGACCATCCTGGTTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGCGGGCGCCTGCAGTCCCAGCTGCTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAACCGAGATCGAGCCACTATACTCCAGCCTGGGCGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAGAATACTGCTATGAATATTCATGTATAAATTTGTGTTTAAACAACTGTTTCCACTTAGGAATGGCAGAGCTAGGTCATATGGTAGTTCTGTGCTTAACTTTTTGGGGAATCATAGAATTATTGTCTGTAGCAGCTATATCACTTTACATTCCCACCAGCAATATAGAAGGGTTCCAGTTTCACCACATCCTCACCAACATTGTTTTTTTTCCTGTTTTTTGATTATGGCCATTCTAGTGGGTGTGAAGCAGTATCTCGTTGTGGTTTTGAGTTGAATTTCCCTAGTGACTAATGATATTGAGCACATTCTCATATGTTTATTGGCCATTTGTATTCTTTGGAGAAATATCTATTCAAAGTCCTTTGTCCATTTTAAATTGGAATGTCTTTTTTGTTGTTGAGTTGTAAGAGTTATTTATATATTTTGGATACTAGACCTTTATCACATACACTATTTGCAAATATTTTTTTCATTCTGCAGTTGTCTTTTTAATTCCTTAATAGTGTCCTTTAATATATTAATACAAAAATGTTTAAGTTTGATGAAGTCCAGTTTATCTATTTTTTTCTTTTGTGGCTCATGCTTTTAGTGTCATATCTAAGAATCCATCATTAAATCTAATGCCATAAAGATGTACACCTGTGTTTTCTTCTAAGCTTTTCTAGTTTTAGCTCTTATGTTTAGGTCTTTGATCCGTTGTGGTATGAAGTAGAGGCCCAACTTTATTCTTTTGAATGAGGTTATCCAGTTGTCTTAGCACCATTTGTTAAAGAGACCCCCTCCTTCCTCTTGAATGGTTTTGGCGTACTTGTCAAAAATCAGTTGACCCTGTGCTTGCTTCGGTAACACATATACTAAAATTGGAATGATACAGAGAAGATTAGCATGCCCCCTACACTACGATGACATGCAAATTCGTGAAGTGTTCTGTTAAAAATTTTTAAATAAAAAAGTTGACCACATATATGGGTTTTTTTCTAGACTCTCAATTCTATATCATATATGTCTATCCATATGCTATATTTGTTTTTTTTTTTTTTTTCCTTTTTTTCCTTGAGATGAGGTCTCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATCACAATTCACCACAGCCTCAGCCTCCTGGGCTCAAGTGATCTTCTCGCTTCAGCCTCCCAAGTAGCTGGGACCACAGGTGTTTGCCACCATGCCTGTCTTTTTTTTTTTTTTTTTTTTTTCTTGTAGGGACAGGGTTTTGCCATGTTTCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGCAGTCCTCCCATTTTGGCCTCCCAAAGTCCTAGGATTATAGATATGAGCCATCCACCCAGCCTATACTTTTTTTAATTACCATAGTTTTATAGTAAGTTTTGAAATTGGACAATGTAAGTCCTCCTACTTTGTTCTTTTTCATTATTATTTTTGGCTATTCAGGGGACACTTGCAATTTCATATGAATTTTAGGAACCGTGTATCCATTGCTGCAAAAAGGCAGTTGGAATTTTGATAAGAATTATAGATTAATTTGGGGAAATATTACATACAATCTTAATTATAAACTATTACCTCTATATACATTGTTTACCTGTTTTCTCTTTACTAAACAATACTGCAATGAACTTTGGTTGGTGTGTACATTTTTATTTCTTTGCTAGTATTTCTTTCAGAAAATTCCTACAGGTGAAATAGCTGAGTCAAGAGCGACATGTATTTTTAGTTATAATAGTTGTTACATTGCTCTACAAAAGAAGCTACACCTGTGTACACCTCTCTCCCTACCAATAAGTTATGAAATCGTTTCCTAACACAGGATGTTGTTTTAAATTTTCATCTGATAGGTGAAAAACTGCATTCATTTTTGTTTGGCTTCTATTTCTTTGACTATTAGTGAGCTTTAACATTTTCGTATACATTGGTTGGCCAAATGTACCTTTGCCCACTATATTTATAGCCTTTGGCCATTCTAGTTTTATAGTAAAAATTAACTCTCTTTAGTAACAACCTTTTTTTCACCGTTTGACAACTGGGCATTTTATAAATTGTATCCACAGCATAACTTGTCTGAAAAATAGATCTTCATTTTCATTATGTACTTACAGTATCACATCTCTTTCTATAG
Seq C2 exon
GTTGTTCTCCAAAGAAGTATGGAACGAGTACAGTCCTTTTTTCAGAAAAATAAATGCCGTCTCCCTCTCAAGCCAAGTCTAGTGGCAAAAGAATTAAATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011405:ENST00000265970:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061315=PI3Ka=PD(18.5=55.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development