DreINT0116808 @ danRer10
Intron Retention
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24549166-24551738:-
Coord C1 exon
chr5:24551556-24551738
Coord A exon
chr5:24549285-24551555
Coord C2 exon
chr5:24549166-24549284
Length
2271 bp
Sequences
Splice sites
5' ss Seq
TTGGTACCA
5' ss Score
-0.17
3' ss Seq
CTTTCCTGTCTTCCTATCAGAGA
3' ss Score
9.98
Exon sequences
Seq C1 exon
CTGGAGCGTATGCTGGAGAGCAGTGCTGTGAGAGCTCAGAAGCAGCTGGTTCTGCTGCACCGTGAGGACGGGCCTCCACCCGCTGGAACTGTAGAATGGCTTAACATGCGCAGCTGGATCTCACGACATCTGCACCTGTCCTGTCCTCACAGGGTCTTCTCCAGGAGGAGTCTGCCCAAATTG
Seq A exon
GTACCAAAATATTGTGCCATTATAGTGTTATTGCAAAAGTGAATGCTAATATCAAGCCAAAGGAAATAAGGAAACTTCAGTTTTCCAATGTATACTATGGGTTGCTGGTGCTTAAGAAATAAAACCATATTTTCGCACTCTAAAGCACAATTTGTGTTTGCCAGAATTTTGTCCAGGCAAGTATATTAAACAATCACCGGCCGCTTTATTAGGTACACCTTACTTGATGAGTTATTGAAACTAGACAAACACATCAGTTCGGATATTGGCTCCAGTTTTTATCAACTCCGCTTCCTGTCCAAAGTCAAACATTTCCTAAATCCCACCACACTAGAGATAGCCGTCCACGCTTTTATTACGTCACGGTTAAACTACTGCAATACACTTTACTGTAGAATTTAAAATCTCAAATTTCTCGTGGTCAGTTGGCGCAAAACGCTGCTGCTAGATTCATTTGTAATAGTAGGAAATATGACCACATTACCCCTCTTCTAAGATGCCTCCATTGGCTGCCCATCCAAATTAGAATTGATTTTAAAGTGCTTTTACTGGTATTGAAACCCCTTTACATTCTAGTCCCAACCTACCTCTCAGAGCTGTTGCCTTTTTACACTCCCGTGAAATCTCCTAGATCAAGTGTTTAAACTCTTCTTTTAGTTCCTCAGTCCAGACTGAAACTTAGAGGGGTCAAAGCTTTCTCTGTGGCTTGTTCTCAGTTATAGAAACACTTTGCCCCTTGGGATTAAAATGGCTCTATCACTATCTATTTTTAAATCACTCCTAAAAACTTACTTATTTAGCTTGGCTTTTTAATTTAGTTTTAAAAGCCTTTTTGAATTTTTTCAGTCATTTCTCTTGTCTTATTTCTATGTTTTTATTTTCTGTCTTTTTATTTTACTTTGACTTGTACAGCACTTTGGTCAGTCTTGCGACTTTTTTCAAATGCGCTCTATAAATAAATGAACTTGAACTTGAACCATACTAGTACTGGGTTGAACCCCATTTTTTCCTTGTAAAGAGTGGTTATCTGAGTTACTGTTATCTTTCTATCAGTTGGAACCAGTCTGGCCATTATCTTTTGACCTCTGGCATCAACAAGGCATTTGCACCCACAAAACTGGTGCTCACTGGGCAATTTCTCTTTTTTGGACCATTCTCTATAAACCCTAGAGATGGTTGTGCGTGAAAATCCCAGTAGATCAGCAGTTTGAAAATGAATGTTTTTATCCATCTCTCATAGAATATAGACAATGTATTTTCAAATATATTTAGAAATTGAAAGATAATACAATTAAATTCAAGCAAAATATTGCAAAAAAAATTACAACCTACAAAATTCCAATTAAATGTTTCCTTTTTTTTTTTCTTCTCTTGATTTTGTCCTCATATAACATATACATTTGGGTGTACTAGTTTTAGAACCGTTATCATGAGTTATTTTGTTAGATAAGCTCCAGATTTGGCTTCAGTACTGACTAATCTAATGTATAAGCACAATATAATATTGTATTGCTTCCTATTAAAATATAAATTAAAAAGATAGATCTTTAAGGGGTGTACTTATTTATGCTGAGCACTGTACAAATTAGTCATATTAGTGTTTTTATTTAAAAAACACTTTGTATACAAAATGCATAAAACAATCAAACTAATACCTAGTATATGCATATTAAAAATAAAAATGACATATTATTGTCCTTATTCACCTTATTCTCAGCTGACGAGTGGGCGCAGCCATTTGAATCTTTTTGTCTCGCGACTTCCGGTCACATTCACTTCCATTCATTTTTTGACGTTAACAACTGCTCGTTACGCTGCTTGATGTTGCAATTTAATATTTTCTTATTATATTATGCTACTTGGTCTGTGTAGTCATGGAAACATTTGTTTGTTGAGCAAGTAGTTTGGCCATTTTCTGCCGTTTATTATTCCTAGTCATTTCTCCCATAGGCGACTGAATCGGAAGTTCTAAGACAATCGCGAAAACAGGCGCACTTCCGCATTTTAGAATAAGGTCAATAGGGCACTCAATGAAATGTGTACTAGATTTATAACAGGGGTTATTACGAGACTATAGATCATTCATGACTTTTCAAATCTTCATGCACATAAATTAAACTATATGTGCTTTCTGTAAAACAGGCCCTGGCCCCCATCAACTTTAATTGTAAGGCAAATGCACGTACTTCAAAACTTTTCTCTGTATGATCTCATCTAATCACGATCATTTCTTATCCATACATAACTCCCACTTTCCTGTCTTCCTATCAG
Seq C2 exon
AGAGAGATGTATCAGCGAGTATTTGAGAAGCCTCCCGACCGGCATTCTGACTTCTCACGTCTGGCTCGAATCCTGACAGGCAACGCCATCGCTCTGGTGCTGGGCGGAGGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002:ENSDART00000145061:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0173417=Patatin=PU(4.8=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]