GgaINT0125236 @ galGal4
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1655926-1656608:+
Coord C1 exon
chr17:1655926-1656108
Coord A exon
chr17:1656109-1656489
Coord C2 exon
chr17:1656490-1656608
Length
381 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGTATTCCTCCCTTCTGCAGATA
3' ss Score
11.59
Exon sequences
Seq C1 exon
CTGGAGAGGATGCTGGAGAACACAGCGGTCCGAGCCCAGAAGCAGCTGATTCTGCTCCATAAGGAGGATGGACCTCTCCCTTCCCGAACTGTGGAATGGCTCAATATGAGGAGCTGGTGTTCTGCTCATCTTCATCTCCACTGTCCACGAAGAGTGTTTTCCAAAAGAAGCTTGCCAAAGCTG
Seq A exon
GTGAGATGCCTGATTTGGTGGTTGGGCTCTTAGCTGCAGTACTTTACTTGTAATCCATGTTTCAAATGTAATCTGACGTGATGTTGTTACAGGATGTTCTTATTTGCAACTGAGTATTACATTGCTGCCCTGTTCTTAAATCTATCTGGCTTTCAATGTTTATCAGTAATTTTAAATCCTTGATCAAGAAAGAGAAATATCTTTACAGAAAATACGGCACTACTGTGGAGTTCTTCCAACTTAAGCAAAAATATGGGAGATGAAGTTGATTACTAGGCCTGCTTGAATAGTTTATGACCCCTTTTTTTTTGGTCTGTTGTTAACATGGGCTATAAGACATTCATGCTTTGAGAATGATCATTGTATTCCTCCCTTCTGCAG
Seq C2 exon
ATAGAGATGTATGAACGTGTGTTCCAGAAGCCACCAGACCGCCACTCGGACTTCTCTCGCCTGGCTCGTGTCCTGACTGGAAATGCCATTGCCCTGGTCCTTGGTGGTGGGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000040268:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0173417=Patatin=PU(4.8=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGATGCTGGAGAACA
R:
CTCCCCCACCACCAAGGAC
Band lengths:
297-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]