GgaINT0125236 @ galGal3
Intron Retention
Gene
ENSGALG00000008736 | PNPLA7
Description
NA
Coordinates
chr17:2055595-2056277:+
Coord C1 exon
chr17:2055595-2055777
Coord A exon
chr17:2055778-2056158
Coord C2 exon
chr17:2056159-2056277
Length
381 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TGTATTCCTCCCTTCTGCAGATA
3' ss Score
11.59
Exon sequences
Seq C1 exon
CTGGAGAGGATGCTGGAGAACACAGCGGTCCGAGCCCAGAAGCAGCTGATTCTGCTCCATAAGGAGGATGGACCTCTCCCTTCCCGAACTGTGGAATGGCTCAATATGAGGAGCTGGTGTTCTGCTCATCTTCATCTCCACTGTCCACGAAGAGTGTTTTCCAAAAGAAGCTTGCCAAAGCTG
Seq A exon
GTGAGATGCCTGATTTGGTGGTTGGGCTCTTAGCTGCAGTACTTTACTTGTAATCCATGTTTCAAATGTAATCTGACGTGATGTTGTTACAGGATGTTCTTATTTGCAACTGAGTATTACATTGCTGCCCTGTTCTTAAATCTATCTGGCTTTCAATGTTTATCAGTAATTTTAAATCCTTGATCAAGAAAGAGAAATATCTTTACAGAAAATACGGCACTACTGTGGAGTTCTTCCAACTTAAGCAAAAATATGGGAGATGAAGTTGATTACTAGGCCTGCTTGAATAGTTTATGACCCCTTTTTTTTTGGTCTGTTGTTAACATGGGCTATAAGACATTCATGCTTTGAGAATGATCATTGTATTCCTCCCTTCTGCAG
Seq C2 exon
ATAGAGATGTATGAACGTGTGTTCCAGAAGCCACCAGACCGCCACTCGGACTTCTCTCGCCTGGCTCGTGTCCTGACTGGAAATGCCATTGCCCTGGTCCTTGGTGGTGGGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736:ENSGALT00000014216:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0173417=Patatin=PU(4.8=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGGATGCTGGAGAACA
R:
CTCCCCCACCACCAAGGAC
Band lengths:
297-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]