RnoINT0114533 @ rn6
Intron Retention
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2249602-2250673:+
Coord C1 exon
chr3:2249602-2249784
Coord A exon
chr3:2249785-2250554
Coord C2 exon
chr3:2250555-2250673
Length
770 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTTCCTTTGGCTCCTCTCAGGTT
3' ss Score
9.62
Exon sequences
Seq C1 exon
CTGGAGCAGATGTTGGAGAGCACAGCCGTGCGTGCCCAGAAGCAACTGATCTTGCTGCACAAGGAGGAGGGCCCAGCACCCTCCCGCACAGTGGAGTGGCTCAACATGCGCAGTTGGTGTTCTGGCCATTTGCACCTCTGCTGCCCGCGTCGTGTCTTCTCTAAGAGGAGCCTGCCCAAACTG
Seq A exon
GTGAGGCCTGGTGGTCTGGCTCAGAGGGACTTGGCCCCGACTACATCATCTCGGGCCTCCAGCTATATATTCAGAATGTCTTCCTCCCCCTTTGTTAGCATCAGGGCTTGTGGGTTCTGACTGGCTTGTCTCTTCAACTGCCGAACTCTGACCATGACCTTAACTTTTGGGCTGCCTTGCAGATGAAGAAAGAAAGGCACAGCATGGTGGGGGCACAAGATAGAGGCCATCAAGACCTGGGAACCTGAGCCCAGGAATCTATGCTTGACTGAGGGTCACAGTGCAAGGCTGAGAGCCTCACATAGTGAACCCTAAAGAGATCTCATGGTCAGGTCCCTGTGCTATCCCTTCGGGGCAGAAGCAGACACCTTTTCCTTGGGTCAGCTTTAGTTCTTTGGGCCCAGTGTGAAAGCTAGGTGGTACCCACATGCCATAGCCCATTCAACCCCCATAGCTCAAAGGACAGCATTCTGTCAGCTGCATCTCTCTCAGGACTGAATGCCCCTGAGGGTACTGTCTGCATACAGGGCCAGTGGAGAGATCCTGGTGGTGGGACATCCTGGGGTGCTGTGGTCTTAGGTAGTCTAGAAGCTCCCTCCTGGTCTGTCTGTCTTCTGCCAGCACCCCCAAGCGAGTCTGGATGCTTTCAGACACTTTTGTGCTAACAGGGCTGTGTTCTGGAAAGGATAGGACCTGAGGCAAAGGATAGGACATGCAGAGTTTTAGCTGCAGAAATGCACAAACCTCTGTCTTCCTTTGGCTCCTCTCAG
Seq C2 exon
GTTGAGATGTACACACGCATTTTCCAACGACCACCAGACCGTCATTCCGACTTTTCCCGCCTGGCCCGGATCCTGACAGGCAATGCCATTGCCTTGGTGCTTGGAGGGGGTGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190:ENSRNOT00000011633:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0173417=Patatin=PU(4.8=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAGATGTTGGAGAGCAC
R:
CTCCACCCCCTCCAAGCA
Band lengths:
296-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]