DreINT0118704 @ danRer10
Intron Retention
Gene
ENSDARG00000061304 | ppp1r9a
Description
protein phosphatase 1, regulatory subunit 9A [Source:ZFIN;Acc:ZDB-GENE-060503-660]
Coordinates
chr19:41569096-41572121:+
Coord C1 exon
chr19:41569096-41569200
Coord A exon
chr19:41569201-41571938
Coord C2 exon
chr19:41571939-41572121
Length
2738 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTTT
5' ss Score
1.02
3' ss Seq
TAAGTCTATGTGTTTGTCAGATT
3' ss Score
5.74
Exon sequences
Seq C1 exon
GGTCCGGGTGTGTCAGATGAACTCAGTCTCAGCAGTTCGAGTTCGACCGAGATCAGTGGGGTCCTGAGCGGACGATCGCGGACCCTCACACTCTCCTCTGATGAG
Seq A exon
GTCTTTACTGTGTTTTTTTTAACTTGTGCTATTTAAAGTAAACCTATTTTATCTCAGCTTGTTGCAAATGATGTGCTAAAATAACAGCATTAAAACATTATTAAATACTACATAGACATTTTAATCAACTAATTAATAATACAAAATTACATTTTTATTTTAACAGGTTGTAAACTACAACTTTGTTAATCAAGATGATTTTTTATTATTTTTCTGCCTGGAAATTGTCTGTTATTCTTTAGACTCTGTTATCCTATGGATTTTATTTTACTTTTTTAAGTTTGATTTATAGTTTCTATAGTTCGTAGCAGATATATTAAGAATGTCTTTTATGTCTTGGATAAAAACATTTGTGAACCACTAATTTATAAGTTAATGTTTTCTGACTCAGCGAGTGTTTCTCTTGTCCTTTATGCTGCGTTTATCAGAGTGTGGATATGATAGAGGATGAGGTGAGACACTGAGACCCAGCATGATTTTTCTTCACACCTACAGCGCTCATTGTTAGTTTAGTTCTGGCATTTCTTCCACAATCTTTTTGTTAAAAACTATTTTTAAACAGTAAGAACTCAATATATGTCACATTTGTTACCATACGTGGCCTTTGTTTTCCATGTGTTCTATATGGGATCTATAGTCCCTATTTACCCTTTTCCACATTAGGCATATTTCATATTACTGTAGTCCCTATTTTCCCTTTATGTTTCATAAAAAATATGTTCCATTTGTTTTCCACATGCTCTATATGATTTTTATATTCCATATGGAATGTGTTCCAAATTCAATTCAATTCAGCTTTATTTGTATAGCGCTTTTACAATGTAGATTGTGTCAAAGCAGCTTTACATAAATGGTCATAGTAACTGGATCAGGGTAGTTCAGTTTTAGTGCTTAAGTTCAGTTTAGCTCAGTTCAGTGTGGTTTGAAGTCATTATTGAGAATCCAAACACTGAAGAGCAAATTCATCGATGAGTAGCTTTTCAGATCCTGAACCATGCAAGCCAGTGGGGACAGCGGAGAGGGAAAAAAAACTTCACCAATAGGAGAGTGAAGAAAAAAAACCTTGAGAGAACCAGACTCAGTTCGGCACGACCATTTTAATTTCTCCGCTGGCCAAAAGTTGCTAGGGTAGTATGAAATGAAATGAGTCCCAGCATAACTTTAAGTCAGAATTATTACCCCCCCTGAATTATTAACCCCCCAGTTTCTGTTTAATGGAGGGACGATTTTCTCAACACATTTCTAAACATAATAGTTTTAATAACTCATCTCTAATAACTGATTTATTTGATCTTTGCCACGATGACAGCACATAATATGTTACTAGATATTTTTCAAGATACTTCCATACAGCCTAAAGAGACATTTAAAGGCTTAACTAGGTTAATTAGGTTAACTAGACAGATTAGGGTAATCAGGCAAGTTATTGCACAATAATGGTTTGTTTTGTAGACTACCGAGGAAAAAAATATAGCTTAAAGTGGATAATAATTTTGACATTAAAAAGGTTTTTAAAAATTAAAAACTGCTTTTATCCTAGTAAAAATAAAACAAATAAGACTTTCTCTAGAAGAAAAAATATTATCAGACATACTGTGAAAATTTCCTTGCTTTGTTAAACATAATTTGAGAAATATTTTAAAAAGAAAAAAATTAAGGGGGGCTAATAATTCTGACTTCAAATTTATATGATATATTTTATCTATGTTCCAAATGTTTCATATAAGCCCCTGATTCCCAGCATGACTTTTCTTTTTACCTACAGCACTCCTAGTTAGTCTAGTTCCACAATTTCATTTCAGTCATTTTTGTTCTGAACAATATGATTTGAAAGAACGGGAACTCTATATATTGTACTTTAGTTTCCGTTGTTCTGTTTGTTTTCCAGTTGTTTTCCACGTTCTTTATATGATTTATACCCAGCAGGCACACAATATCAAAGAGATGTCGGGGGACCAAAATTCAGCATCCAAAGGCAACGTTATTTTGACATCCAGTAACAACATCAAATGACGTTGATATTTTGTTGATTTTAGGTTGTGTTGGAAAGTGACCAAAAACCAATGTTGAGCCAACATCTTTCATACTGTACCAACGTCATATTGACGTCAAATATTGACATTTATTCGTCAGGTTTGGCAACCAAAATTTAATTTCTGATAGATGTCATATTGGTACACAATGTCAAGCAGTAACATCATTAGACGTTAATATTTGGTCGTTTTTAGGTTGGGTTGGAAAGTGACATCTGTCCGAAGTTGGACATTGATGTCGGTCTGACATTGAGGTCTGACGTCAATCCAATTTTCAGTTCCAACCAAAATGCAGCATCCCTCGACATTGGGGGACAACATACACCTGGTGTCCTGTGTCTGCTGGGTATGTTCCATATGGAATATGTGTTCCAAATGTTCCATATGAGCCACTGAGTCCCAGCAAAACCTTTCTATAGTGCTCAGTTTGTCTAGTTCTATCATTTCTTGCAAGTCCTTTTTGTTTTTTGTTTCAAACAGTGTTTTAAAATGACAAGAACTTAATATGGTAATTTTTTGTTTCTATGTTCCGTTTGCTTTCCATATGAAATATGTTCCATATTTTTTAAATATTTCATTTGTTTCCTGAATATGTTCTGCTTGATTTTCAACGGTTTCATTTATACTGCTTTCTTGAAATGCATGTGGAAGACAGTGAACGTTAATTACGGATCAGTGCTGATTGTAAGTCTATGTGTTTGTCAG
Seq C2 exon
ATTGTGGACGAGGGTCTGCCAGTGAAGCCACAGCAGTGGCAGAACCGCAGTGTGACTGAATGGACGTGTCAACAGGTGTCCTGCTGGCTCATGGGACTGAACTTGGAACAATACGTGTCTCTCTTTACTGCCAAGAATTTGGATGGAGAGCAGCTTCTGAAGCTGGACAGCACCGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061304:ENSDART00000138687:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=NA C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764712=SAM_2=PU(66.2=70.5)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]