DreINT0123363 @ danRer10
Intron Retention
Gene
ENSDARG00000074246 | rab14
Description
RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
Coordinates
chr5:62700934-62701709:+
Coord C1 exon
chr5:62700934-62701000
Coord A exon
chr5:62701001-62701621
Coord C2 exon
chr5:62701622-62701709
Length
621 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
CAATGTAAATAATTCTTCAGGTC
3' ss Score
5.6
Exon sequences
Seq C1 exon
GCGAAGCACGTACAATCACCTTAGCAGCTGGCTGACTGATGCCAGGAATCTCACCAACCCCAATACT
Seq A exon
GTAAGTTCACTGACTACATACTTCATACTGGCTGTATGAAGAAGACTATAAAACATTTACATTTAAAGGTCCTGTGAAGTGCTTTAAAATGTGCATTTTTATTTGATGTTTGACACAATCTTAATGGAACATAAATAGAGGGTGGGGCATAGTGTAGCCCCTCTATCTTAAAAAAAATAGCCTTTAGTGTTGTTTTATCACCGCTCTGCCAGCAAAGGATTGAGCTCAAGAGCATCAAATGAAAAGCAAATGCGAGTCCTGAACGGGGCGGGACATGTCAAATACTAGAGAGCATTTGATTGGTTATGATTTTATGAGTAACTGTAGTATGGGTTGACGTGAAAAAAAAAAAAAACATTTATCAATTTAGGTGAAAATGACAACCTACAAGCTTTACATGTTTATATCAGTTTAATATTTTCTAAATGGGAATTTTGTCCCTTTTTGCGGCACACTAGCTAATAGATATAATTGAAAAACTAACAATATTGATACTAACATATACAAAACGTAATTTTAATTTCTCTGGACCTTTAAGTATACAGTGTTGGAGCTTTATACATGTTTTAACAGCTTATGTTGTGTGCTTAATCGCCTTAAACAATGTAAATAATTCTTCAG
Seq C2 exon
GTCATCATTCTAATCGGTAACAAAGCAGACCTAGAAGCCCAGCGAGATGTCACATATGAAGAGGCCAAGCAGTTTGCTGAAGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074246:ENSDART00000124616:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(13.6=100)
A:
NA
C2:
PF0007117=Ras=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]