HsaINT0135973 @ hg19
Intron Retention
Gene
ENSG00000119396 | RAB14
Description
RAB14, member RAS oncogene family [Source:HGNC Symbol;Acc:16524]
Coordinates
chr9:123945589-123949297:-
Coord C1 exon
chr9:123949231-123949297
Coord A exon
chr9:123945677-123949230
Coord C2 exon
chr9:123945589-123945676
Length
3554 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTTTTGATCACAAATTAGGTA
3' ss Score
3.97
Exon sequences
Seq C1 exon
AAGAAGTACATATAACCACTTAAGCAGCTGGTTGACAGATGCAAGGAATCTCACCAATCCAAATACT
Seq A exon
GTAAGTTAAATGGCATCTTATTACACAGAAAATTTAAGAACTAAGCTAACCCAAAAAGGGAAGCCATTTACTGGTGAGATTTTTGTCTTCAGGTACTAAGAATGAGAGAATTTTTATTGTATTCTTCAATTAGTTGAAGAAAACCTAACAGTTATTTTTCAGTTCTTATTAAACCAGGTTTTGCATTTTATTATACCTAGGTTTTTTGTTCATGTTTGTCATTACTATTATGAATGTAGTGGTGATCTCATGTGAAGACTATGAAATCTGAAATTATGATTTTAAAAGGGATCTGCATTAATTTCATAAAACTTTAGCATTGGAGGATACTGGGCAAAACGTAGAAGAGATCTTTCTGTACTGTTTTTTACAACTGCATGTGAATCTGCGTTACCTCAATAAAAATTTCAACTACAGGAGGAGAATTAAGGATAAAAATTTCAGTCAAAAATAAAAAGGATTCTATATGTGTTAAAACATTAGCTTCTTAACCAGACTGAGATGATATTTATTGAGATTTTAAAGGCTAGCCACCATGCTAGACTCTGCAGTATACAAAGATAAACATGGATCCTTGGTCCCAAAGAGCTTATAGTCTAGCAGGGAGAGAACCAGCAGATATGCAGATAACTGTGCTGCAAAGTAGATTGAAGCACGAATTAGAAATAGAGGGACTGGCACAGTGCTGGAGAGCCTAGGATGATCAGTGCCGTCTGGAGAGAAAGCAGCTTTACAGAGGAGTGGTGTTTGAGCTGGTCCTTGAGGGGTGAGTGAAGTTTCAGTAGATATTGTTGAGGGTATGCCAGGAACAATGTGAGGAAAGACACACTGAGCTGTGACTTGAGTTTCTCAGGAACAAGGCTTGTGTCTCACTTGGCTTTATACCCCCAACATTTGGTAGAGGCCTCCTTCAAGAACTGTGTTATCAGTGGTAAGATGAGCTTTTATCAGGAAATGGTGGTTTAATCATATTGAGAGTCAGTTAACATTGTTTGCCTATCATGCTAGGGACTGTGCCTGAAACTTTCATTTCCATTATCGCATTAAACCCAAGGTTTACATACACACCTATAGATGGGTGTTCATAGCAGCTTTATTTCCAGTAGCCCAGAACTGGAAACCTAGGTGTTTCCCAACCTGGCCATTGACAGGTGAATGGTTAAACAGTTCGGAACATCTCTATAGTGGAGTACTACTAAGCCGTACGTAGGAATGAATTCTTTATATATGCAGCAGTTGAGCTGGTTCTCAAGGGCATCATACCCAGTAAAAAAGCCAATCTCAAAAGTTTACATACTGTATGATTTCATTTAGAAAACATTCTCAAAATGACAAAATTGTAGAGATGGGGAGTAGATTAGTGATTGCCAGGGATTAGCAAAGGGGGTGGAGGGTGGTAGTGGTGTGATGACATAGAGGGCAGCACAGAAGCAGTTTCTTTGTAGTGATAGAACAGTTCTGTATCCTGATAGTGATGATGGAGATCTGCACCTGAGATAAAATTACATAGAACCACCCATGCACGAACGCACATGTGCCTGAGAATGTGTAAAAACTGAAATCTGAATAAGGGCTGCAGATTGTACCAATGTCAGTTTCCTGGTTTTGAGAGTGTATTATAGTTACATAACATCCTACCATTAGGGAAGTTTGGTGAAGGGTACACAGGACCTCACTGTTATTTTTTGTAAGTCTCTGTGACTCTATAGCTATTTCAAGTAAAATATTAAAAACAAAACTCATTGTAGAGGGCCCGTGGAGGAGTATAATAAAATTAACCTTACCGCCCTGTGTCCTTCCTGCCTCATTTATGTGCTTTGAAATAGAACCAGATCAGGAGAAAAAAAATTTCTTGAGTTTTTCTTAAGTGCTCCATTTTCTATAGAATTGCCCTTGATTTCTGTGTAGAAGTTGTGTTCTCTACCATTTTGTTGTGGGCATGTTTTGTATCTCTGTAATTAGCATGCCACTTTATGTCTTCCCTTTCAGGGAGATAAGAAGCCTTATTTGGAGATTCATAGGGAATCAGGAGCAGGGCAGTATTTCTTGTTTTGAGTACCTATCTTGTAATGGCCCTATGCTAGTCATTGTGGCTTTACCAGACTTGATTTTTTATAAATTGATTTCCTTTTTAAGTATCATTATTTTATTCTTTTAAAATACTAATGGATAGTATATGAAAGTTTCTTCCCCTTCACAGTGGGCACTTTGTCCACACTGTTTAAAGAATGCTCACTTTTGTTGTACTACTTAACTGTCCTTGCATGAGGTTTACATTCAGATAAAAATGATTATTTGGTTTATGGACACACATTTTTGAAAGTGGAAGAGCCAGGAGCTGTAATTTTACATGAAAAAAAGTTAATGGCTGAAGTGCCTTTTAGTTGAAACCATCCATTCCTAAAGTGTTCATATCTAGATTACCATATCTGTTTGGAAGGGGGAAAAAGGGAAGGATTTTACCAGTTGGTGTCAAATAAGCTCATAAATGTACAAAGACAGTTTATCCATAACCCCCCTCCCCACCCCAGGTAAAGGCCAAAGCCCTTTGCTGTTTCCCAAGGGTACATATTTTTTTCTTACAACTTTGCAGAGCTGCCTTTAACTTTGGCCTAACTTCACTTGTATGAATGGTTCCAAGGTGGATATAGGTTGGTGGGTGATATTTTGCCTTGGATTTGAACTTACTGCATACGTGCCCCCAAACCCCTACTCCCAGCTGCCCCTTGTGTATACACATAGACATCTCTTATCAGTTACTGTTAACTATAAACTCAATCCTTTCTAGGGATAGTGTGGGGTAGGATAGTATTTGTCTCAAGATCTCAGTTTGGGTTTCTACCTGAGATCTAATGTCCTCCTACCACTGACTCACTGAGTGACCTTCAGCAAGTCCTTTTGCCTTATTTGAGCTTCAGTTTCCTTACTGATAGCCTAAAGGAGTTGAACCTAGTGGCTTTCAAACTTTTTGAGGATCTCAGAACTGTTTGAAAACCTGATGGAAGCCATGAATCTTCTCCTCTAGGGAATGCCCACAATTACAGTATTTACAGTATTTCAAGGTATTTACAGATCCCCTGGAGCTTGTCCATGAACCCTTAGTAATCTTACTCAGCTATATCGTAATCTTTGGACTAGACCAGGTGTCACCAAAGTATGTATGGCCTGTGGGCCACATTCAGCCCACAGCCTGTTTTTGACTGGCTTGTGAACTAAGGATGATTTTTAAATTTTTAAAGGGTTGTTAAAAACAACAACAAAAAAACCCAGCAACGAACATGTAACAGAGACCATATGAGGCCCACAAACCTGAAGAATATAGTATTTATTCTTTACAGAAAGTTTGTCAACCCCTGACCTAGATCATTGCTAAGGTCCTTTGTAGTAATGACTTCATGAATCTGTAGCCCTGTCTAGTGGATAATTGCTAGTACTTGGTTTTCTTTTTAGGCCCAGTCATTTTTTCTATCAAGATTTTTGGATTTCAGAATTTGCATGGTTGGTTTAAATTACTGCTTTTGTTACAAGGTGTCTTTCTTTTGATCACAAATTAG
Seq C2 exon
GTAATAATTCTCATAGGAAATAAAGCAGATTTGGAGGCACAGAGAGATGTTACATATGAAGAAGCCAAACAGTTTGCTGAAGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119396-RAB14:NM_016322:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(13.6=100)
A:
NA
C2:
PF0007117=Ras=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)