GgaINT0125654 @ galGal4
Intron Retention
Gene
ENSGALG00000001474 | RAB14
Description
Ras-related protein Rab-14 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZKU5]
Coordinates
chr17:8380165-8381181:-
Coord C1 exon
chr17:8381115-8381181
Coord A exon
chr17:8380253-8381114
Coord C2 exon
chr17:8380165-8380252
Length
862 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTTTCTCTCTTCTGAACTAGGTG
3' ss Score
11.17
Exon sequences
Seq C1 exon
AAGAAGTACGTATAATCACTTAAGCAGCTGGCTGACAGATGCAAGGAATCTCACCAATCCAAATACT
Seq A exon
GTAAGTTGGACTCTGTTTAGCTTGAAAGCAAGATTGCTTATCTCAAAGCAAGAGATGGAAGGCTTAGGCCAAAGCATCTGCAGTGATAGCAGTGTTCTTTAAAAGAAGCTGCCTCTGTTTCTCCGCTTACTTAGTTCTGAATGTCCCCACTCTCCAGCAGATCAGTAGCTCTTCCCTTGCTGCAGTTGGTGCAGAAATGTAGGTTCTTGTGCAGGAGAACAAGAGCCTATTCCAAATACCTTACTGTGCTTTACTTCTTGTGGGCCTTTTTCCAGCTGTTGGAGACCAAAATTATGGTAACCTGAACAGAGCGTAACTTCTGTTACTACTGCTTAGAGCCTTGTGGTGGTAATGAGGTGAATTGGAATGTAAACTGAATCTTGAGCAAAAGCTGTTCCAGTCTCTGGAGGGGTGGGAAGGAGGGGGGCTGTTCTGTGTCTCTCTGACTAAACAACAGATCTGTTGTCCTACAGTCGTCTTGTGAATGACTCTGAAATAGTTTAGAACTGAGCTTTTGGGAAGACTCCCTGCTGCGATGAAAGAAAACTTGTAAAGATTCTGGCTGGATTAGCAGATAACTAAACACAAGGAGTACAACTTTCAGGACTGAAGAGTAGGACTGGTGCTTTTTAGGACCTCATCTCATGAGAACAGCTTAAAGAATTTGAAAATAGCAGCTGGCAACTGTTCCTGATTATAGAGGGGCACTGCTAGAGCAGCGCTGCCCTGAAGATGCATGAGTTTTGCAGTTATGCTTTTTTCAAATGTTTCCTCTTTATTTTTCATCTTTTAGAGTAAACAGGGTAGTAGTGAACACACTAATAAGCTTTTTCTCAGACTAATTTTCTCTCTTCTGAACTAG
Seq C2 exon
GTGATAATCCTCATAGGAAATAAAGCAGATCTGGAAGCACAGAGGGATGTTACATATGAAGAAGCCAAACAATTTGCTGAAGAAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001474:ENSGALT00000002236:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(13.6=100)
A:
NA
C2:
PF0007117=Ras=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]