DreINT0123370 @ danRer10
Intron Retention
Gene
ENSDARG00000035188 | rab14l
Description
RAB14, member RAS oncogene family, like [Source:ZFIN;Acc:ZDB-GENE-040426-1207]
Coordinates
chr5:71390407-71391711:-
Coord C1 exon
chr5:71391645-71391711
Coord A exon
chr5:71390495-71391644
Coord C2 exon
chr5:71390407-71390494
Length
1150 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGC
5' ss Score
4.2
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGTC
3' ss Score
10.47
Exon sequences
Seq C1 exon
GAGAAGCACATACAACCACCTCAGCAGCTGGCTGACGGACGCCAGAAACCTCACCAACCCCAACACT
Seq A exon
GTGAGCAGAACACACACACGCACACACACACACACACACCTCACAACACCACTGAGGCTACTTTATCCAGTTGAATGCACTTCTGTAGCATGTAGACAAGCACATGGCAAAAGCTCAATAAGAACCTGATGCTTACCATGTGCACTCGCTGACCAGAGTCTTGTGGAGGATCTCAGCTGTGACAGCAGCAGATAACAACTCATCTCCTAGTGGATCATGGAGTGTCAGAAGGAGGATTTCTGCTGATCTGCATCCCGATCATCACCAATACTGCAGAAGACCTACTGGAACCAGCATAGACCACAATTCACACTGAAATCAGTCAAGTTTGGTGAAGGAGACATCATGGTTTGGGGTTTATTCAGTATGGAGAGATCTGCAACATCAACAGCCTGAGGTATCAAGACATCTGTGCTGCCCATTACATTACAAACCACAGGAGAGGACAATTCTCCAGCAGGATAGCGCTCCTGCTCATACTTCAGCCTCCACATCAAAGCTCCTGAAGGTCAAGCTGCACCAGGATTGGCCAGCCCAGTCACCAGACATCAACATTATTGAGCTGATGAAGGAGGAGGCGTTGAAGATGAACACAGAGACTCTTGATGAACTCTGGGATCCTGCTGAAGGCTTTCTTCTTCATTCCAGATGACTTTATTAATCAGTGATGTGAGTCATGTCAGAGATGTATGGATGCAGTCCTCCAAGCTCATGATGGAGTCAGACACAATCTTCATTCTGTCTCCACTGCAGCAGGACTTTATATTCTATACTGGACATTATTTCTGTTCAGTGATGACACTTTAGTCTGAGCAGAGTCAGAGCGCACTGTCCTCATCAAATCAGTCAACATCAAGACATGATCAGATTTATTGAGCTCATCTAGAGGCCTTCACCTTTCATAGAGACACTTCTGACACCAAATCAGCAACTAGAAGGCAGCAAGACTTTAATATAAGGCCTCGACAGCCTCCTGCAGCTTGAAATGAGGATCGTTAACAACATACGCCTGTGGCAGTGACATTTCTCTAACATTCTCCACTATAACTGCAAACAAAAGAACATACAGGTGCATTACAACACTTACATTACTTTTACATTACAACACTGAGGCTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAG
Seq C2 exon
GTCATCATACTGATAGGAAATAAAGCCGATCTGGAGGCGCAGCGGGACGTGACGTACGAGGAGGCCAAGCAGTTTGCGGAGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035188:ENSDART00000050971:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0007117=Ras=FE(13.6=100)
A:
NA
C2:
PF0007117=Ras=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]