DreINT0124244 @ danRer10
Intron Retention
Gene
ENSDARG00000068370 | ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:ZFIN;Acc:ZDB-GENE-070720-16]
Coordinates
chr8:32913554-32914652:-
Coord C1 exon
chr8:32914560-32914652
Coord A exon
chr8:32913660-32914559
Coord C2 exon
chr8:32913554-32913659
Length
900 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
GTGTTTATTTATGTCTAAAGTAT
3' ss Score
3.9
Exon sequences
Seq C1 exon
CTGTCATCCTGGAAGCGCTATTGGATTGTCCTGTCTGGCTCCATTCTCATCTATTTTGGTTCCAAAGCTCTAAGAGCAAATGAACGAAGACAT
Seq A exon
GTAAGTGATTAAATATTTTTGTAATTTAATAAGAACTCAGGTTTTCACACTTGTAGTTCAGTTCACTTGGTTTATTTAGGTCTGAATCAAAAAAATAATAAAAAAATAATCAACAAATACTCTGCATTTGCTTTGTATTCACAGTTTTAACCTAAAGATTCATAAACAAACAAAAAGACATGGATTATAAAGGTGTAAGCTGGGCTTGTTTGTTTGTTGTGTGTAGATACATGTTATAGCATTTTTATAAGATGAAGAACTTTGAAAAAGACCTGTAAATAATTATTCTGCCACACAAAGACATGGTGCAAGAAAACACAATGTATAATCTAATGCACATGCAATAAAAGTAGTTTAATGATGCAGCAGGAATAAACTAGCACACATTGAGCTTTACTCATTTAAAACATGATCAAATAGTACTATATTTTAATTACAAAGCTTAACAAATAACAAATATTAGTATCAGTATAGTTGTATATACAAATCAATATCAGTTCATTTTGTGCAGCATATATCCTCTTTCCTTTAACTGTAATAATTCAGAATTGTAATAATTATAAATAAACGTTACAACAATGGTATTACTTTTTATTTTTTAGAAATGTTTATTAACTCTTTTCCTGACACCATTTTTTCTAAGTTGCCAGCCACTGCCAGCAATGTTGATGATTTTAAAATCAGTCTATTTTTTAAAAGTGGTTTGTTTCTTTAATTTAGTAGTTTAGATTGCTTAATTGTATTAAGCTCAGCATCACACTTATTCAAAAAAGGCACTCTGGCAGAGCATTTACTGCAGAGTGTTACCAAAACAGCCAATGTAAACACACCATAAACTTAGACAAAGTGTACTGAACCTCACCTCTTATCCTCTTTGTATGTGTTTATTTATGTCTAAAG
Seq C2 exon
TATAAATCTAGGCCGTGTAAAAAGATAACGCTCACAGGCTGGATGGTGGTGCTGCCAGACAACCCTGAACATCCAAACATTTTCCAGCTCACTGATCCTGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068370:ENSDART00000098840:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.083
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
NA
C2:
PF0016924=PH=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCATCCTGGAAGCGCTAT
R:
TCTATCAGGATCAGTGAGCTGGA
Band lengths:
198-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]