GgaINT0124703 @ galGal4
Intron Retention
Gene
ENSGALG00000000906 | RALGPS1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
Coordinates
chr17:10357590-10357966:+
Coord C1 exon
chr17:10357590-10357682
Coord A exon
chr17:10357683-10357860
Coord C2 exon
chr17:10357861-10357966
Length
178 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
TACTTTTCTGTCTCTTGCAGTAT
3' ss Score
10.59
Exon sequences
Seq C1 exon
CTCTCTTCATGGACTAGATACTGGATTATGCTTTCAGGATCGAATCTTCTGTATTTTGGAGCAAAATCTTTAAGAGGCAATGAAAGAAAACAT
Seq A exon
GTAAGGTTTAAATTTGTTCTGAAAGCAAAATCTGCATATTCGTAGACAGATTTGAAAAGGTATTTTAAGTGTACCTGCTGTTCTTCTAGGGTAAGCAGTATGTTTGCACAACTTCTACAACAAAAAAATGAATCTCCAATATGTTCTTAGCTATGACATACTTTTCTGTCTCTTGCAG
Seq C2 exon
TATAAATCTACACCTAGTAAAAAGATCTCCATTGTGGGCTGGATGGTGGCACTGCCTGATGACCCTGAACATCCTGACATTTTCCAGCTAAATAACCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000906:ENSGALT00000001330:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
NA
C2:
PF0016924=PH=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTTCATGGACTAGATACTGGA
R:
TGTCAGGGTTATTTAGCTGGAA
Band lengths:
195-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]