MmuINT0131365 @ mm10
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:33143044-33143392:-
Coord C1 exon
chr2:33143300-33143392
Coord A exon
chr2:33143150-33143299
Coord C2 exon
chr2:33143044-33143149
Length
150 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGACTGTTGCTCTTTTCTAGTAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTGTCCTCGTGGACCAGGTACTGGGTTGTACTCTCAGGAGCCACCCTCCTTTACTATGGAGCCAAGTCTTTGCGGGGTACAGACAGAAAACAT
Seq A exon
GTAAGTCCTCTGAAAAGGCTGCCTGTGCTGGACTTCCCCTAGTGGGAGTGACCCCTATGGCTGCAAGAGCTAGGGTGGGCCATGTTAGTCTGCCTTGCTGAGGGCAGGGTGTGGGCCCAGGCCTCCCAGATGACTGTTGCTCTTTTCTAG
Seq C2 exon
TATAAATCTACACCTGGCAAGAAGGTCTCCATCGTAGGCTGGATGGTGCAGCTGCCAGATGACCCCGAGCACCCAGATATCTTCCAGCTGAATAACCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831:ENSMUST00000042615:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
NA
C2:
PF0016924=PH=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGGACCAGGTACT
R:
TTGTCAGGGTTATTCAGCTGGA
Band lengths:
194-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types