MmuINT0131365 @ mm9
Intron Retention
Gene
ENSMUSG00000038831 | Ralgps1
Description
Ral GEF with PH domain and SH3 binding motif 1 [Source:MGI Symbol;Acc:MGI:1922008]
Coordinates
chr2:32998564-32998912:-
Coord C1 exon
chr2:32998820-32998912
Coord A exon
chr2:32998670-32998819
Coord C2 exon
chr2:32998564-32998669
Length
150 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGACTGTTGCTCTTTTCTAGTAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
CTGTCCTCGTGGACCAGGTACTGGGTTGTACTCTCAGGAGCCACCCTCCTTTACTATGGAGCCAAGTCTTTGCGGGGTACAGACAGAAAACAT
Seq A exon
GTAAGTCCTCTGAAAAGGCTGCCTGTGCTGGACTTCCCCTAGTGGGAGTGACCCCTATGGCTGCAAGAGCTAGGGTGGGCCATGTTAGTCTGCCTTGCTGAGGGCAGGGTGTGGGCCCAGGCCTCCCAGATGACTGTTGCTCTTTTCTAG
Seq C2 exon
TATAAATCTACACCTGGCAAGAAGGTCTCCATCGTAGGCTGGATGGTGCAGCTGCCAGATGACCCCGAGCACCCAGATATCTTCCAGCTGAATAACCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038831-Ralgps1:NM_175211:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(26.8=100)
A:
NA
C2:
PF0016924=PH=FE(31.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGGACCAGGTACT
R:
TTGTCAGGGTTATTCAGCTGGA
Band lengths:
194-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: