DreINT0130778 @ danRer10
Intron Retention
Gene
ENSDARG00000058102 | sardh
Description
sarcosine dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-996]
Coordinates
chr10:10432652-10435657:+
Coord C1 exon
chr10:10432652-10432830
Coord A exon
chr10:10432831-10435477
Coord C2 exon
chr10:10435478-10435657
Length
2647 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
TGAGTAATTTTGCTTTTCAGCTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
GACTTTTGTGGCAGTTAAGACCAAGTGATACTGAGGTAGAGCTGTTGGCTCACACTCGCAATGTGGTCAGCTCAGAGCTGAAGGAGGAGACGGGCCTTGAGACGGGCTGGATCCAAAATGGAGGCCTGTTCATTGCGTCCAACAAGCAGCGATTGGACGAGTACAAGCGACTCATGTCG
Seq A exon
GTAAGACACAAGTCCTAAAAACACACATACTTTAAAGATATATATATACACAGGATTTTCATTAGCCTTCAAGTTGCTCAAACTAAAAAGCATATTGAAAATATACAAATGCGTCAGAAGTTTTTAGAATTGTATAAGGTGATTTTTTTTTTTATGCAGTCCAACAAAAGGTTTTAAAATTGCAATAAAATAATTTAGTTTTCATTGATTTTTCAGGAACATATAACCAGTGGGAACAAACAAACAAACAAAAAAATGTATATACATACATATATACAAATATACATAAATATTCCACACATGTATATCTACATACAGTTGAATCATTAGCCCCCCTTTGAATTTTTTTATTTTTTTTAAACTTTTTTAAATATTTCCAAAATTGTTTAAAAGAGCAAGGAAATTTTCACAGTATGTCTGATAATATTTTTTCTTCTGGAGAAAGTCTTATTGTTTTATTTTAGCTAGTATAAAATATGTTTTTAATTTTTTAAACGCCATTTTAAGAACAAAATTATAAGCCCCTTTAAGCAAAATTCCCCCCCCCCCCGATGTTTTACAGAACAAACCATCATTATTCAGTAGCTTGCCTAATTACCCTAACCTGGGTAAGTCAAACATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATAAGAAACATTAAAAAGAAAATAGGTAAAAATAAACAGGGGGGCTAATAATTTTGACTTCAACTGTACATGCATATATGAAAATATTAAATTAACCTAACCAAGAAAATAAATAAAAAAATAAGTATAAAATAAAATTTTATAAAAAGGTTACCAAACATATTCTAACCTCTAGAATTATGTAAATGTTCAATTACAGATTAGATTGTCGTTGTGGAGAAAGCCAGCCATTTACTCCATTTCTTTTCAAAGATCTCTAATTGTAATCAAAGTGCATGAGTCATTTTGTTCCATTTCCTCAACTTCTGCTGTAAATTTGAAACATTCATCTTTAGTTGGTGGGTCTTCTTTATACCATTTCAGGTTTTGGCTTTTTTACCTGTTCCCCAAAATATCTTAAATAGGTATCTATCCTCCTTTTCAAGTTTAATAGAAATATCTTCTAGATAAATTACTTCAAATGATCTGGGAATATGAAGATCCAAAAATATCATTGATGGCGGAGTGCACAGTTTCCCAAAAATTGTTAATTCTTGAGCACTGCCAGAAAACATTTTATGATTTCTTTTTAAAGATGAAGTGATGCATTAGTTGCAAAAAACTGGTTCACTGGGGCTTGTATTATGTTTCAGTCGCATTGGTTATTGGAAATATAGTCATTTCACAATTGCATTATCAAGAAAATCATTGTTTTAAAAGAAACAAATATTTATTATTTCTTTTTTTTTCTCAACATATTTGTGTATAAATTTTTCATAGATTCATTCACACCCATAACTTAATGAAATCCACTTTGCCTCCTATGTTAAATTACACTTTGTGGCCAAAATGAATGCTCAGGCCTGTAGGCAGCGTGGTGAAAGGGGTTGTTCTTTTTTTCTCAAAAAGTGGACCTTTTTGCTGTTATACGCCTCAGTTTTCATTTAACTATGAGATTTAAATACTGCATTTTAGTGACATTTTAAGCAGTAATTTTCTTTTTTTGCTGGATTAGCTAATCAGATGTCATCATAACCACACTTTTTGATTTACTAAAAATATTTCCTAAAAATTTGCAGTAAAGAAAAATTAAAACAAGACTATTTTTTTAAAATACAAATTTATAACATCATATATCATTAGGAAAAAAATAGTAATCTGTTAAAATTTCAAAGTAATAAACCTGTAGCCTACGGTCATTTATTAGACAAAAAACAAACTGGCCAGCACATTCAACTGTTCTCACTTACAAGTTGGCCTTTTAATAAAAAATAATAATTAAAACATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAACGACTAAAGTGAGCAAACAGCCTCAAAAACACAGACGTGACGGGATTAGCGCCTTTTGCTGTGAAGTGACATCTGACCGCTGTGGACTCCGCATGCCATTAAAGCCTTCATTGGACAGTTATTTATATAAAAAAAATGAGGGCAAAAATAGGGAAAGGGAGGTCATGTACTGGACAAGTCAATAAATATACATATATAGGATGTTACCACTCAGTTAGTGGGTTATGTCATGTGACTCACGTCACATTATTGTGGCTTTGAGGCTCTATGGGATTCCAATGACTGGCCAGAGTTATTTAGAATTACACTTTATTACTATATATATTAAATATAAATATATAAATTATATAATAAATATTTTATATAATGTTTAATTACATAAAAGAATTTAAAGGACAAATTATGGACCTATTGGCCGTGGGGGGTGGTTTGTTTAAACCACCCGAACACCCCCCAAGGCTACCTGCATGATGCTATTTGCATTAACTGCAAACAGACAAAATGATCACTAAAAATAAGATAAAAAAAAATCTCTACAAGGATGCAAAGGGCATAGTAAATTCAGCAATTGATCTATCAGAATCAAGAATTTAAAAGACTTGTGCATTAACCATGAATGAGTTATGCCTGATTAAATGTATTCTAATGAGTAATTTTGCTTTTCAG
Seq C2 exon
CTGGGTAAAGTGTATGGCATTGAGTCACACGTCCTGTCGCCAGCTGAGACCAAAGACCTGTATCCTCTGATGAATGTCAAAGATCTTTATGGCACGCTCTATGTTCCTAAAGATGGCACCATGGACCCAGCGGGCACCTGCACCACCCTCTCCAGAGCAGCCACTGCACGCGGCGCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058102:ENSDART00000080904:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(16.4=100)
A:
NA
C2:
PF0126619=DAO=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]