RnoINT0130710 @ rn6
Intron Retention
Gene
ENSRNOG00000006916 | Sardh
Description
sarcosine dehydrogenase [Source:RGD Symbol;Acc:621125]
Coordinates
chr3:5794921-5796316:-
Coord C1 exon
chr3:5796138-5796316
Coord A exon
chr3:5795101-5796137
Coord C2 exon
chr3:5794921-5795100
Length
1037 bp
Sequences
Splice sites
5' ss Seq
TCGGTGGGT
5' ss Score
6.9
3' ss Seq
TTTCTTCTGGGTTTTTCTAGTTG
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCCTACTGTGGCAGCTGCGGCCCAGCGATGTGGAAGTAGAGCTTCTGGCTCACACACGGCAAGTGGTGAGCCATGATCTGGAAGAGGAGACTGGGCTTCACACAGGCTGGATCCAGAATGGTGGCCTCTTCATCGCCTCCAACCAGCAGCGCCTGGATGAATACAAGAGGCTCATGTCG
Seq A exon
GTGGGTGCACTCTTGGGGAAAGGTGGGGTGCATACCTTATGGGAGCGCACATGAACGCTGTGCTCCAAGTGGGCGTCCATCAAGGTGAAGGAGGCCCCAGCAGTGAGTACATGCAGCAGTCCTCTGGCACTGGAAGCCGGTGCCTACAGATCTGAGTTCAAACCCTCTTTGCTGGCTGGGCTACCTGGGTGGAGAGCCTGGGCCACGCTCTTCATTCAAAATTCCTGGAGGGGGCTGGGGATGTGGTTTAGTTGGTTGTCCAGTGTGCACAAAGCCCTGGGTTCCACCCCAACTCTGCTCTCAGATTTAGAACTGCTTGGAGTCACTGAGTTTTACCTCTGAGGTAACCTGAAGCTTGGTGTAGTGGGGCATGCCTCTTACCCTGTCCGAAAGATCAGGAGTTTAAGGTCGTCATTGGCTGTACAGTTTCTGGCCAGCCTGGAACACATGAGACCCTGTCTCAAAGAGAAAAATGTCCTTAGAGAATCTCAGTGCTAAGTGGGTGAAAGCCTGTTAAATAGGTCGTCACCTCCATTGGGTTGACTGTCCTTGGTTCAGTTAAATATGGGGGATGGCCTGTTTGGCAGTGCCATCAAGCTAGGAGCATGCTGGTGTTTCTTGGGAAAAATCCAGAATCATCAGACCTAACGTATGAGAGTGTGAGGGGATTGCATTATAACACACTAATAATTTGAAGTTCCTTATTGTCTAAGTTCCTAGCCAAGCGCACAGTTTACTATCCGCTCATTTCTGGGAGTGGGCGTTCAGTCCTCCCATTTCCCTTAGGAAGGGAGGGAGCAGATCCGCCGGAGCAGAGGCTACAGCCTAAGGGGCGTGGCTCCAGACTCTGCCTCTGCACCGGCTCCACCCTCTTCACCTTCTTGAAGGAGATGACCTAAGGGGTCCTCTGGGCACAGAGACCTGCCCAGGCTTCTAGAGGCAGCAGGGGTGGGGGTGTACCTAGGCCTCTGGGTCAGGTGAGTCCCATGAAGACCTGCTTCCCATGTGCTCATGAACTTTCTTCTGGGTTTTTCTAG
Seq C2 exon
TTGGGCAAGGCCTACGGTATAGAATCCCATGTGCTGAGCCCTGCAGAGACCAAGGATCTGTATCCGCTGATGAATGTGGACGACCTCTATGGGACCCTGTATGTGCCTCGGGATGGTACCATGGACCCGGCTGGCACCTGCACTACCCTCACCAGAGCAGCAGTGGCTAGGGGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006916:ENSRNOT00000009555:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(16.4=100)
A:
NA
C2:
PF0126619=DAO=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTGTGGCAGCTGCG
R:
ACTGCTGCTCTGGTGAGGGTA
Band lengths:
342-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]