HsaINT0144949 @ hg38
Intron Retention
Gene
ENSG00000123453 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr9:133731305-133732601:-
Coord C1 exon
chr9:133732423-133732601
Coord A exon
chr9:133731485-133732422
Coord C2 exon
chr9:133731305-133731484
Length
938 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
CCTCCCCTGGGTCCCCCTAGCTG
3' ss Score
7.92
Exon sequences
Seq C1 exon
GCCTGCTGTGGCAGCTGCGGCCCAGTGACGTGGAGGTGGAGCTTCTGGCCCACACTCGGCGGGTGGTGAGCCGGGAGCTGGAGGAGGAGACGGGACTACACACGGGCTGGATCCAGAATGGGGGCCTCTTCATCGCGTCCAACCGGCAGCGCCTGGACGAGTACAAGAGGCTCATGTCG
Seq A exon
GTGTGTGCTCCCCTGCGGGGGGCAAGGAGGGGGGCTTGGGTGGGTGGGTGCACTCCCTGGGGGGTCATATTGGTGGGTGCACCCCCTGTGGGGGGGTAGGGTGGGCTCCCTGTGAGGGTGGAGGTACGCTGGGGGTTCATGTCCGTGTGCGCATCCCCTGCGGGGGGCTGGGGTGGGGGGCTCGTGTGGATGAGTCTGCTTCCTGTGGGGTCGGGAGTGGGGCTCATGTCGGTGGGCACCCTTCTGCCGCGAGAGAAGGGGACACGCCACAGGGAAGGAGCCCCGGCAGGTGACAGATCTGGGTTCCAGCCCTTGCGCTGCCCCTTGCTGGCTGTGCCACCTGGAGAAAGCGACTTTGCCAGGCTTCATTCAGAATTCCCAGACAGAGAATCTGATTGGCCCAGCTTCTCCCTGTCCCAGTGGTCCACGCCTGAGGACACTGATTGGCTGTTCTTGGGCCAATCAAATGTGGGGGCGTGGTCTATCTGACAGTCTGAAACAGGATCTTGGCCTCTCTTGACAGCTGGTCTGACTGGGAAACCTCTCAGGCCCAAAGTATTAGACCTGTGGGGTTATTTATCTTATATAATAGACACTTTGTGCCAGGCACTGGTCTAAGTTCTTTGTCAATGACATACACTATTCTCACCCCCACTTCACCTGAGTGAGCCTGAAGCGACTTTGCCCCAGGTTGGTCACACAGCTGGCGAGGGTCGGATTGGCACAGGCGGCCTGGCCCCGGAGCCTGCCTCAGTGCCCTGCTCCTTAACTCTTATGCTGAAGCGGATTCAAGGGACAGGCTCCGGGGGCGTGGGGACCGGCTAAGGCTTCTGGGAGAAAGTGAGGCTGGGGTTTGCGGTGGATGCCCAGTTGGGGAGGGGAGTGGCCCAGGGGTCTGCTCCCCACGGACTCAGTTAACCTCCCCTGGGTCCCCCTAG
Seq C2 exon
CTGGGCAAGGCGTATGGTGTGGAATCCCATGTGCTGAGCCCGGCAGAGACCAAGACTCTGTACCCGCTGATGAATGTGGACGACCTCTACGGGACCCTGTATGTGCCGCACGACGGTACCATGGACCCCGCTGGCACCTGTACCACCCTCGCCAGGGCAGCTTCTGCCCGAGGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123453:ENST00000371872:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.060
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(20.8=100)
A:
NA
C2:
PF0126619=DAO=FE(20.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCCAGTGACGTGGAG
R:
CTGTGCTCCTCGGGCAGAAG
Band lengths:
342-1280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development