GgaINT1024331 @ galGal4
Intron Retention
Gene
ENSGALG00000002855 | SARDH
Description
sarcosine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:10536]
Coordinates
chr17:7043166-7043841:-
Coord C1 exon
chr17:7043663-7043841
Coord A exon
chr17:7043346-7043662
Coord C2 exon
chr17:7043166-7043345
Length
317 bp
Sequences
Splice sites
5' ss Seq
TCGGTAGGA
5' ss Score
7.45
3' ss Seq
GTTTTCTTGTCTGCTGGCAGCTG
3' ss Score
8.82
Exon sequences
Seq C1 exon
GTTTGCTGTGGCAGCTCCGTCCCAGCGACGTGGAGGTGGAGCTGCTGGCGCACACGCGGGACGTGGTGAGCCGCGATCTGCCGGCCGAGACGGGGCTGCACACGGGCTGGGTGCAGAACGGGGGGCTCTTCATCGCCTCCAACAAGCAGCGCCTCGATGAGTACAAGCGGCTCATGTCG
Seq A exon
GTAGGATCAGCCCTCGGCATCCCCCTGGGACATAGCACTGCTCTGTTGGGGTTCATTGGGTTGGCATCAGGCAAGATGAAGCCCAAAGGTGATCCTTTTTTGCCCTTTCAGATGTCGTTTTCCCAGTTTCAGGGCAGCTTGTGTGCGTCCTTGTCCCGTATTCCCATGCAGATCATCACACCCGCCTCCAGATGGAGCGCTTGCCTTTGAGCAACATCATCCCTGGGCCATGCGGGGGATTGGGGGGCAAAGCATGTCCTTGGGTGTCCTCCAGCATGGGATGTGTTCACACTCGTGGTTTTCTTGTCTGCTGGCAG
Seq C2 exon
CTGGGGAAGGTGTACGGTGTGGAGTCACACGTCCTGACCCCGGCACAGACCAAGGAGCTGTACCCGCTGATGAATGTGGACGACCTGTATGGCACACTCTACGTCCCCAAAGATGGCACCATGGATCCCGCTGGCACCTGCTCCACCCTTGCCAGAGCAGCAGCAGCCAGAGGTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002855:ENSGALT00000004499:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0126619=DAO=FE(16.4=100)
A:
NA
C2:
PF0126619=DAO=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAGCTCCGTCCCAG
R:
GTAGCACCTCTGGCTGCTG
Band lengths:
351-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]