DreINT0131003 @ danRer10
Intron Retention
Gene
ENSDARG00000057687 | sbk3
Description
SH3 domain binding kinase family, member 3 [Source:ZFIN;Acc:ZDB-GENE-080204-39]
Coordinates
chr16:12820784-12825508:-
Coord C1 exon
chr16:12825306-12825508
Coord A exon
chr16:12821787-12825305
Coord C2 exon
chr16:12820784-12821786
Length
3519 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GTGTGTGTGTTGTTGTGCAGGCG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GAACTCCGATGGCCCTGAAGTTCTTCCCGCGGCGCTCCACTACTCTGCAGGCATTTCTGCGTGAATATAACCTGTCGGTCTGCTTCTGCACGCATCCATCTCTGACCCGGGCACTGGGCATCTTCTACTCCACTCCCTCTCACTACGTCTTCGCCCAGGAGGCTGGTCTCTATGGTGACCTCTATAATGTCATCGTCTCAGAG
Seq A exon
GTCAGTACATGCTGACTGATTGATGTTCTTTATCACAAAATCTCAAATTTGTACGCTTTTCAATTTTGAGTCGAGGTTTAAACTATAAAGTTGTTCAGAGGAGATTTTTAGATGAGCATAACAGTGGCCAAGAAAGGTAGAGCTGTCATTTTGGGATAGATCTGGAGTCAACAAATTCTTTTTTGATTCTTTCTTCTCAAACCCTGCCAGGAGTACAAGTATAAGCTACCCTGTACATAGATGCTCAATCAAACATATTACTTTTCATTCATGAAAAACAGCAGAAAACAGTCAAATCACTTGCTCTACAAACAAATGTTTGCATGATTATACAATTAAAGTAGAATCATAGGTCCCACTTTATATTAAGTGTCCCTAACTACTAGGTACTTGCATCAAAAAAATAAATACAATGTACTTACTGTGTATATAATGTATTTGAGAACACTTGTGGTGCTTTTGAGTTGGGATAGAGGTTGGGTTATGGACAGGTTTGGTGGCATGGGTAGATTTAAGGGTAGGTTAAGGTGTATGGGATGATCAACAGTGTATTTACAAATGTAATTACAAAAGTTAATCACAGATGTAATTACATACATGTATTTAATCAAGCATAAGTGCACAGTAAATACATGTATTTACACAATAAGTACATTGTAACAATATATTAATCCTTATGTAAGTACATATTTGTTAAGGCTACTTAATATAAAGTGGGACCGAATCATATAATAAAAAATGACAGTTTGCAACATTAAACAGCATAACGAGCTGTTTTGAACGTCACATAAATGAATGGAAGTGAATGAGCTCGGAAGTCTCGATCCAAAAAGATTCAAATGGCTGCGCCTGCTCGTACGCGAAGAATAAGGTGAATACATGTCTGTTGTATAAACATGTTTTTATTTGTAGATTTTTTATTATGTAAAGCCTAATTAGGGACGAGGGCTGCAAACTAGCTTTATGCTATATGCACCATGTATGCAGCATTGGTTGTCTTTGTACAACACTGTCAAGGGTGTTTTCCCTGTGAACACACTAAATCAAAATCTGCACTGAAATAACATTAAAAATAAGAGTGTGCTGTTTAATAAAGTAGAAATTTGTTCAAAACAAAAACAAGATCAATTTTTAGCATCATGCATCTGTTGTGTTTTTACTTGGAGCTTAAAACCTACTTTTTTGTACGTTGTGAACAATAGATGCAAATTTTAACCATACTTGTCAAACATATCAGTATTTGTCAGTCGTTTGTTGTACAACATGTCGGATCAAGGAATGAAACAGTGCAAACAAACACCATTAACTAGAAATTAAATGAAAGGCAACTGCAATTTTCACAAATATGGCCTTATTTAGATGTTTTAGCATGAAATACTTTAACTAACTGTTAGAAAATACAAGATAGGCCTTGTATAAACAAACCACTAAAATAGTTCAAACTAAGTCTTTGATTTCAACCTGTTCTTTAAAGAGAACCTGGAAAACTGTCTTAAAGTGGAGTCGATTCCCTTTGACCCAATGTATTGCAAACATTAGGTTGGACTTCCAGTCCCACCACATGCAGAGCCACACGACAGTCCTGACTGAAATTATGATGATGCGTCATTTTTGTTGTGACGTGTCTCCAGGGAACAGTGTGTCTTTGATTATTCAGGCACGTCCATGTTCTCTGATACAGTCCTGTGTTCTCACTCTCCTGCCAAACACAACTGTTCCTATCATCAGCTTGATACATTAATGCAAGTTAATGAGAGGACTCGACGTACTGCCGTGAAGCAGATTAAACACATACACGCATTTTCTGACATCTCATTAATCTTTCTCTCGTCTTACAACTTGCTATATTAGAATAACTGGAATACAAATAGACGAATGTATATGAATACCAATGTTGTTACACAAAAGAAAATAAGGAAACAATACTATAGTGGTAAAATAACAATAAATATTTAGTAATAATAATAATAATAAAAATAATAATAATAATAACAATAATAATAACAATGTACTGATGATGAACATACATAATCAATAATAATATTGAAAAAGAAATCCGAAGAGTAAATAAAGAATGAAGCAAACCAGTATGAATGAATGAATAAATGAATGAAGAAGCCTGCAATATTGATGAAAAAAGGCACAATGAAGAAAAGTGAATGAAAGAATAAAGTAAATGACTGAACAAATGAATGAACATGGACAAATAAATAAATTATTAAATAAATCAACATGCATACAAATTAAAAAAATAACATTATTAAAACACCATTGTGTAAAATGAATAAAATACCACAAATTGGATAAATAAATAAATATATACATACATATATGGATAATGATATGCTTTCTGAATGAATGAATGAATGAATGAATACATGAATAATTGAGTGAATGAATGAATGAATGAATGAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGGAAGGAAGAAAGGAAGGAAGGAAGAAAGGAAGGAAAATGAATGAATCAGAATGAATGAAAGAACAATTGAGTGAACGAATGAAGAAGGAAAATATCAAATGAATAAATGATTGATTGAGGGAATTAGCAAATGAATGAAAGAACAAGTGAATATATGGAAGAATAAGTGAAAGAAAGAATGAATGAATGAGGGAATAAACAAATGGGTGGAAATTACGAATGAATGAGAGAACGAAAAAACGAATGAATGAACAACAGAAAGATTAAATTAATTAATAAATGAATGAATGATTGAGAGAATAAACAAATGAAATAAAAATAATGAAGGGATTAGCGAATGAATGAGGGTAAGAACAAATGAATGAGAGAAAGATCAAATGAATGAATGAATGAATGAATGAGGGAATGAACAATTTAATTAAAGAACATGTGAATGAATGGATGAATAAAAGAAAGAATGAATAAATGAAATAACAAATTAACCAAATAATGGAATGAACAAATGAATGAATAAAAAAACAAATGAATGAATGAGGGAAATAACCAATGAGTGAGAGAAAGAACAAATGAATGAAAAGATCAACTGGAATAAATTGATGATTGAGGGAATGAAGAAATGAATGAATGGATTAGCAATGAATGAGGGTAAGAATGAATGAATTAGAGAAAGAGCAAATTGAATGAATGAACAAGGGAAAGATCAAATGAATGAATAAATCATTAAGGGAATGAACAAATGAATAAAAAACAAGTGGATGCATGATTGAATAAATGAAAGGATGAATGAATGAAAGTACAAGTGATTGAACGAATGAGGAAATGAACAAATGAATGAAAGAAAGAACTAATTGATGGATGAATGAATGAATTATATTATACGAGAATGAATGTATTAAATGCCATTTTGTATGTAAATCACAATAACAATATTGATGGTTTTATTATTAAAAATTAAAACAAGGTGCCCAAAATTGGTGCAAATCAAATGTACAAATAATACTATGTTTATTGTATCAAGTTAATCATGATGACAGTGATAAAGTATGTGTGTGTGTGTGTGTGTGTTGTTGTGCAG
Seq C2 exon
GCGGGTGTAAGTGAGCACTGCACCCAGCGGGTGATGTCTCAGCTGAGCAGTGCCGTCTCTCACCTGCACTCGCTGGGCTTCGTCCACCGCGACATCAAGCCAGAGAACATCTTCCTATGCGACCGCTCCTGCCATTGGGTCAAACTGGGCGACTTCGGCCTGGCGCGACCACAGGGCACAGAGGTCCGCGCCGTCTGGTACAACTCCCCCTTCTGCGTGCCCGAAGTGGAGCCTGCCAAGACACTCAGCGAGACAGAAGACGACATCTGGATGACTGTGGAACCCAGTCTGGATACCTGGGCTTTAGGGATCCTCATTTACTGCCTGCTGACCAGCTGCTTCCCTTGGGAGGAGAGCACTTCTGATGACCCGTCCTACTGTAAATACATAGACTGGTTCAATCGGGTCGGTCAGAGAGATGCGGGCGAAGTAGGAGTAGCTGATCAGTTTGACTCTTTGAGCTCACTGGTGCTCGAGCTGCTAAGGAAACTACTCAACCCAGAGCCCAGGCTTCGTCCCAGGCCTGACGAGATCCTGTCTTACCTTGGAGGAGCCTGGCTACTGAAGACGGAGAAAGAGGAGAAGCGTAGAGAGGAGGAGGCACGTGTGGAGGCCAAGAAGATGGTGGACAGAGGAGGAGTGGAAAAGGAGAAGGAGATCCTGGGACGGAGAGAGAGATGAAAGGTCATGAACAATGGCAGTGTTATAAACAGATGTACTTTATTTCTACAATTTATAGTATTTTTGTAGGTTTTGTATAGTGGGTTTTATTGTGAATTACTGTATGTAAATATATGTGAACTTTTTTTTAAAAGATGTAGAATTTTTGCAAACTTGTTGTACAGTGGTTGCCCAAAATATTATAAATCAATATGTATATATAGATATTTATATATTATGATTAAATATAGAAGGAAAATATTGACACAAACAAACACATTCTCAAATAACGTTGTTCAAAGTGAGATTTCAGTAATGGTAAATAAATAAATAAATAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057687:ENSDART00000080414:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.5=100)
A:
NA
C2:
PF0006920=Pkinase=PD(66.3=79.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]