RnoINT0130953 @ rn6
Intron Retention
Gene
ENSRNOG00000038625 | Sbk2
Description
SH3 domain binding kinase family, member 2 [Source:RGD Symbol;Acc:1563279]
Coordinates
chr1:72430523-72433488:+
Coord C1 exon
chr1:72430523-72430725
Coord A exon
chr1:72430726-72431814
Coord C2 exon
chr1:72431815-72433488
Length
1089 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCCCCCACTTCCCCCACAGGTG
3' ss Score
12.97
Exon sequences
Seq C1 exon
GAACACCCCTGGCGCTGAAGCAGCTCCCCAAGCACTCCACTTCCCTCCGCAGCTTCCTGTATGAGTTCTGCGTGGGCCTCTCGCTTGGCACACATCCAGCCATCGTGGCAGCCTATGGCATTGGCATTGAGTCAGCCAATTCCTACAGCTTCCTGACAGAGCCTGTTCTCCACGGGGACCTCATCACCTTCATCAAGCCCAAG
Seq A exon
GTAAGTAGGTAGGCCCTGAGCATGCCTTCCTGAGCCTCACCAGCATTTATGGGAAGCTCCAAACAGCATGGACCGCAGGGATCATGTTCACTGTGTTAGGCCACACTGGGTTTGTTGGGTCACTTTAGATTTTGTTGACTATGTCCTACTGAGATTAACCAGCACTCACAAGCTCATAGTCTTCTCTGTGGGGATTAACAGGCTTCATGGGCTCTCTGGGATCCATCAGTTTACACCAGGCCTCACAGATCTCTCACACCAGGTCACACCAGTTGCTCATGCGAGGTAGGCCTCAGCATTCCTACAAGCCCGTAGGTCTTGTAGGCTCACACTAGACCTCAGGGACCTCAGAAGTTCACACAATGGCCTCACAGCTCACACTATGTCTCGCAGGCTCATAGACTCATCCCCCGAGTAGACCCAATAAGCTCACTGGCTCAAAAGGCCTCACAGCTCATATTGGGACTCAAAGGTTCATAGGCCTCACAAGGCTCACACTAGACCTTACAGGTCTGAGGTTCTCATAGGCCTGACAGGCTTGTACCAGGCTTCAGAGACCCCTAGGCCTTACAGGCTCACATTGGACCTCACAGGCCTGACAGGCTCACATCCTCACAGACATACACTATGCCTCACAAAAACCTTGGAAGCTCACACCACACAGGCTCACACCGGGCCTCATAGGCTTCACAGGCACACAGGATAACACTAATATTCACACGCGATCTCAGAGGTTTATACTAGGCCTCATAGACACTACATTCTCAAAGGATTCACAGGCCGCTAAGCCTCAGATATTCACTGGCTTCTCGGGGGCTCACAGGCCTCACAGGATTAAAGTAGGCCTCTCAAGGGTCGCAACCCTCACCAGGTCCCATGAGACCTCCCGAGGGTCACAAGTCTCACAGACTTACACAGTCACACCAGGCAGGCCTCATGGGCCTTGCTGTGTGAACTGTCTGTTGGCCTTTCAGCTTTTCCCTCAGCATCTGCACATGGGGTTGAAAAGTAAGCCCTACCTTTGCGTTTTCCCTCAACAGCTGGGAGAGCAGTGTACATGCTCCATCTTCTCCCCCACTTCCCCCACAG
Seq C2 exon
GTGGGTCTCCCACAGCCAGCAGTCCAGCGCTGTGCCGCCCAACTGGCCTCTGCCCTGGAGCACATTCACTCCCATGGCCTGGTGTACCGGGACTTGAAGCCAGAGAATGTGCTGGTGTGTGACCCAGCCTGCCAGCGTGTCAAACTGACAGACTTTGGCCACACCCGGCCCCGAGGGACAATGCTCCGACTCACTGGGCCACCTATCCCCTACACTGCCCCTGAGCTCTGTGCCCCACCCCCCCTCCCTGAGGGACTACCCATCCAACCTGCCCTGGATGCCTGGGCTCTGGGGGTCCTGATCTTCTGCCTTCTTACTGGCTACTTCCCCTGGGACCAGCCCCTGGTGGAGGTTGACCCTTTCTTCGAAGACTTTCTCATCTGGCAGGCTTCTGGCCAGCCCCAAGACCGGCCACAGCCATGGTATAACCTGTCACCTGCAGCAGACACTCTCCTGTGGGGGCTGCTGGATCCTCACCCCCGGAAGCGGAACCCTGTAAGCTCCATCAAGAGCTATCTAGGCCAACCCTGGAAGCAGAGGGAGGAGGGGGCTGAGGAATTGACAAAGGAGCTGAGAGAAGATGGGTCGAGAGGAGGACAGGAGGCTGCAAAGGGAGAGCAACCTGCATGCTGAGACCGGCTTAGCCTGAGCTGCCTGGCTGTGGCCTCTTCTCTGTTTTCAATCTGTCTCTGATCTGTCCTATGTGTTATGTGTGTCCCTCCTTTATGCTGTGTGTGCATCCGTAAATGTGTGTATGTGTGCTTATTTGTATATGTGTGCACATGTGTTTATGCGTGTAGACATGCAGATATATGTATCTGTGTGTATGCACACATATGTGTTTCTATGTGTGCATGTGTTCATGTGCGTATATGTATGTGAACATATGTATCTGTGTATGCACATATGTGTATGTGCATGGCATGTGTGTATGTACATGAGTGTATGTGTATGTGTGTGTATACATGTATATACATGTATCTGTGTACACACATATGTGTGTGCATGGCATGTGTGTATGCACGTGAGTGTGTGTGTGTATGTGTGTGGTGCTGTATGTAAATCAGAGGACTTTTAGGAGTCAGCCCTCTTCTTCCACCTTTGAGCCCAGCCACGGAACTGAATTCTTGTCAGTCTTCGAGTGCCTTTACCTATGGAAGCCGTCTTGCAGGCTCTGGTCTATAACTCTGGATCCTCCTGCCTCAGCTTCCTGAGTCTTGGGATAGCAGGCATGCACCATGCTCAGCTGTCCTGCATAGCTTTCGCCATCCCACCCACCTCAGCTAGCCTTCCCCACAAACCCAGGTAAAATGGCCACCTGCTGTGAACTTCACAATCCTAGGCCCCTCTGTACTTCCATGGCGTGTGCCGTACCTTTACTAACTGCTTATTTTCTGAACCCCCAGAGGGTTGGTTTTGACCCCTGAAGGAATGACCCTACATCTCTGAGCAATGCCCAGCCTGCAGCCAATGAGTAGACACAGCTACTCAGCATTGCTCCCCACTACTGGGCCTCTCACCCTCTTCATCACTGTCCCCTGGCTCTCTCATGCGGCTTCGCTCCACTCAGAGCTGCTCTGGCTTTTGTCGCTCACCCACCTGCATGCTGGGACAGCACCTTCTGTGTGAGGTACACTTGTCCAGCTGCTCTCTGCAAATAAAGTTCCCCAGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038625:ENSRNOT00000058956:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.171
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(65.7=83.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGCAGCTTCCTGTATGAGT
R:
CAGTGAGTCGGAGCATTGTCC
Band lengths:
354-1443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]