BtaINT0128805 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006121 | SBK2
Description
SH3 domain binding kinase family, member 2 [Source:HGNC Symbol;Acc:HGNC:34416]
Coordinates
chr18:62437596-62438857:+
Coord C1 exon
chr18:62437596-62437798
Coord A exon
chr18:62437799-62438296
Coord C2 exon
chr18:62438297-62438857
Length
498 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTGACGCCCGTTCCCGCAGGTG
3' ss Score
10.53
Exon sequences
Seq C1 exon
GCACGGTGCTGGCTCTGAAGCAGCTCCCGAAGGCTTCCACCACGCTGCGCGGCTTCCTCTACGAGTTCTGTGTGGGCCTCTCCCTGGGCTCGCATGCGGCCATCGTGGCGGCCTGCGGCGTCGGCCTGGAGTCGGCCGACTCCTACAGCTTCCTGACTGAGCCCGTGCTGCACGGCGACCTCATCGCCTACATCCGTCCCAAG
Seq A exon
GTGGGTCGGCCCCGGAGCTTGGAGCTGGGAGGGGCGGGGGCGGGGGGGGGCCTGGAGCGGACACCCTGCTCAGCCTGGGCCTCAGGAGTCACACTCAGGGCAGCCTGAGCGCGTCGCCCTGCAGGGGCCCCACCGCGCCCGCAGGTCTGGTGGGATGGACGCGCCCCTCCGAGTCTACGGCTGTCACGGAGGCAACGCCGAGCCTACCTCACAGGCTCACCCTGGGCCCACGGGCTCACCCCAGGCCTCATCAGGGCCCCCCATGGGGCTCAGCCCAGGCCCCCCCACCACGGGCTCACCCCCAGGCCCCTCCCACGGGGCTCACCCCAGGCCTCCTCGGGGCCAACTAGGCCTCTGTCGCCCTGGGTCTGCTTCCAGGGGCTGAGGACAAGCTCCAAGGCCAGCCCTTGTTGGTGGGCTGGGGAGCTGGGACCCCGACGCTTGTCCCCGGGGCTGAGGACAAGCCCTGCGCCCAGCCCCTGACGCCCGTTCCCGCAG
Seq C2 exon
GTGGGCCTCCCGCAGGCAGCTGCCCAGCGCTGCGCGACCCAGCTGGCCTCGGCCCTGGAGCACGTCCACTCTCTTGGCCTGGTATACCGGGACCTCAAGCCCGAGAACGTGCTGGTTTGCGACCCCGATTGCCGGCGGGTCAAGCTGGCGGACTTTGGCCACACGCGGCCGCGGGGGACCCTGCTGCGCCTGGCCGGGGCCCCCATCCCCTACACGGCCCCCGAGCTCTGCGCGCCCCCGCCCCTCCCCGAGGGGCTGCCCATCCAACCCGCCCTGGATGCCTGGGCGCTGGGCGTCCTGCTCTTCTGCCTTCTCACCGGCTACTTCCCCTGGGACCAGCCCCTGGCCGAGGCCGACCCCTTCTACGAGGACTTCGTCGTCTGGCAGGCCTCTGGCCAGCCCGACCACCGGCCTCGGCCCTGGTTCGGCCTGACGCCCACGGCCGACACCCTGCTGTTGGGGCTGCTGGAGCCCCAGCCGCGGAGGAGGAGCCCCGTGAGCTCCGTCCGGGGCTTCCTGGGGCGGCCCTGGAGGCAGCGGGAGGGGGAGGCTGAGGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006121:ENSBTAT00000008038:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.2=100)
A:
NA
C2:
PF0006920=Pkinase=PD(65.4=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCATCGCCTACATCCGTC
R:
TGAGAAGGCAGAAGAGCAGGA
Band lengths:
342-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development