GgaINT1024410 @ galGal4
Intron Retention
Gene
ENSGALG00000027253 | SBK3
Description
SH3 domain binding kinase family, member 3 [Source:HGNC Symbol;Acc:HGNC:44121]
Coordinates
chrLGE64:684878-686176:-
Coord C1 exon
chrLGE64:685974-686176
Coord A exon
chrLGE64:685406-685973
Coord C2 exon
chrLGE64:684878-685405
Length
568 bp
Sequences
Splice sites
5' ss Seq
GGGGTGTGT
5' ss Score
3.14
3' ss Seq
GACATTGCTGCCTTCCCCAGGAG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GCTCACCAGTGGTCCTCAAGCTGATGTTGAAGGAACGGACAGAGCGACGGGCATTCCTGCGGGAGTATTGCATAGCCCGGTGCCTCTCTGGTCATGCTGCCTGCATCCATGCCCTGCCCCTTGCCTTTGAGAATTCCACACATTTTGCCTTTGGGCAGGAGCTGGCTCCCGCTGGGGACTTGTGCAACCTTCTCACACCAGGG
Seq A exon
GTGTGTGTGTCTCAGGGCTGGGGGGCACAACAGTGGGCTGGGGAGGAGAAGGGGCTGGGAAAAGGTTGCAGTGGGTACAGGGAGGAGGTGGGAACAAAGCGGACCTTGCAGCGGTGTGAGATCACGGGGAGGATGTGTGTGCATGGGGAGGCTCTTTGCAATAGGGAGCATGTTTGTGTGATGCATGGGGACATCATTTGCAGTGAACTGTGTACCTATGGTGTCCATGGGGAGACCCTCTGCAAGGGGCCGCATGCTCATGCACTGCACAGGGACATCCTTTGCAGCAGAGTGCATGCCTATGGTTTTCCTGAGGAGGTCCTTTGCAGTGGGTTGCACAGCCACGTATTTTTCAGTATGGTGCATGCCCACATTGTGCATGGGAACACGCAGTGTGTTGCATGTACACCCTTTGCAGTGGAGTGTGAGCTCATGTGGTGCACCAGGAGCCCCATCATGGTACCCTCTGGGGTCTGCTATGGGGTGTGTCCCATGCTGGTGGTACCAGGCAGGGATTTGGGCTCTGCAGCAGCCCCTCCAAGGGAAGTGACATTGCTGCCTTCCCCAG
Seq C2 exon
GAGGGTCTGCCTGAAGTGCTGGTAAAGCGCTGTGCCTCTCAGCTGGCCGAGGCACTGGATTTCATGCACAGCCGGGCCCTGGTGCACCGGGATGTCAAGCTGGACAACGTACTGCTCTTCGACCACGAGTGCCGTCGTGTGAAGCTGGCTGACTTTGGGCTCACCCGCCTGCAGGGTTCGGAAATTGGTGCCATGTCTGGTGCGCTGCCCTACGCCCCGCCGGAGCTCTGCTTGCTGCAGGGCTCTGACACACTGGAGCTGGACTCCAGCCTGGATGTTTGGGCTTTTGCCGTGCTGCTCTTCTGCCTCTGCACTGGCTGCTTCCCATGGGCTGTAGCTGCCAGCCCTGACCCCCAGTTTGAGGCCTTCAGTGCTTGGCAGGGTGACACAGTGGGCCGGGGGGCACCGGAGTCTTGGGGTGGCTTTGAGTGTGGGGCACAGGAGATGCTGCAGCGCCTGCTGCGGCTTGACCCTGACCGCCGCAGCCCAGCCATCGAGGTGCGCAAGTACCTGGCCCTGCCCTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027253:ENSGALT00000045707:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.1=100)
A:
NA
C2:
PF0006920=Pkinase=FE(65.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGTGGTCCTCAAGCTGAT
R:
CCAAAGTCAGCCAGCTTCACA
Band lengths:
357-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]