MmuINT0139071 @ mm9
Intron Retention
Gene
ENSMUSG00000030433 | Sbk2
Description
SH3-binding domain kinase family, member 2 [Source:MGI Symbol;Acc:MGI:2685925]
Coordinates
chr7:4908683-4910634:-
Coord C1 exon
chr7:4910432-4910634
Coord A exon
chr7:4909316-4910431
Coord C2 exon
chr7:4908683-4909315
Length
1116 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TCATCATCTCTGCCCTGCAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
GAACACCCCTGGCGCTGAAGCAGCTCCCGAAGCAATCCACTTCCCTCCGTGGCTTCCTGTATGAGTTCTGCGTGGGCCTCTCACTTGGCACACATTCTGCCATCGTGACAGCCTATGGCATTGGCATTGAGTCAGCCAATTCCTACAGCTTCCTGACAGAACCTGTCCTCCATGGGGACCTAATCACCTTCATCCAGCCCAAG
Seq A exon
GTGAGTAGGTAGGCCCTGAGCATGCCTTCATGAGCCTTACCAGCATTGATGGGAAGCTCCAACCAAACAGCATGGACCACAGGAGTCATGTTTACTGTTGTTGGGCCACACTGGATTTGTTGGGTCACTTTAGATTTCATTGACTATGTCCTACTGAGATTAACCAGCTCTCACAAGCTCATAAGTCTCCTCTGCGGGAGCTAAAAGGCTTCATGGGCTCTCTGGGATCCATCACACTAGGCCTCACAGATCCTTCCAGGTCACACCAGGTGCTCTTGCTAGACCTCAGCATTCTTACACACTCATAAGACTTGACGGCTCAGGCTAGACCTCAGGGACCTCAGAAGTTCACAGGCCTCACAGCTCACACTGTGCCTCACAGGTCACAGGCTCATTCCCCCAGTAGGCTCAACAAGCTCATAGGACTCGCCAGCTCAAAAGGCCTCACAGCTCATATTAGGGCTCAAAGGTTCATAGGACTCACAAGACTCAGTTTCAAGTAGGCCTCACAAGCTCACACTAGACCTCACAGGCCTGAAGTTCTCACAGGCCCTACAGGCTTGCACCAGGCCTCAGAGACTCCTAGGTCATACAGGCTCACACTGGACCTCACAGTATAGGCCTCATAGTCTCACATCCTCACAGACACACACTATCCCTCACAAAAACCTGTTCATACCTGACAGGCTCACACGAGGCCTCATAGGCCTCACACCCACACAAGCTAACACTAATATTCACACAAGATCTCAGAGTTTTATACTAAGCCTCATAGGCATTACAGTCTCAAAGGATTCATAGGCTTCTAAGCCTCAGAAGTTCACAGTAGGCTTCTCATGGCTCACAGGCCTCATAGGCTTCAAGTAGGCCTCTCAAGGGTCACAACCCTCACCAGATCCCACAAGACCTCACGAGGGTCACAAGTCTCACAGACTTAGAGGCCTCACCAAGTCACACTAGGCAGGCCTCACAGGCCTCACCAGTGTGACGTGTTTGTTTGTCGGCCTCTTCAGCTTTCCCCGTGGCATCTGCACATGGGGTTGAAAAGAAGTCCTATCTTTGCATTGTCCCTCAACAGCTGGGGGAGCAGTGTCTTTCATCATCTCTGCCCTGCAG
Seq C2 exon
GTGGGTCTCCCACAGCCAGCAGCCCAGCGCTGTGCAGCCCAACTGGCCTCTGCCCTGGAACACATTCACTCGCATGGCCTGGTGTACCGGGACTTGAAGCCAGAGAATGTGCTGGTGTGTGACCCAGCCTGCCAGCGCGTCAAGCTGACAGACTTCGGCCACACCCGGCCCCGAGGGACCCTGCTCCGACTCACTGGGCCACCTATCCCCTACACTGCCCCTGAGCTCTGTGCCCCACCACCCCTCCCCGAGGGACTACCCATCCAACCTTCCCTGGATGCCTGGGCCCTAGGGGTCCTGATCTTCTGCCTCCTTACTGGCTACTTCCCCTGGGACCAGCCCCTGGTGGAGGTTGACCCTTTCTTTGAGGACTTTCTCATCTGGCAGGCTTCTGGTCAGCCCCAAGACCGGCCACAGCCCTGGTATAGCCTGTCACCTGCAGCAGACACTCTCCTATGGGGGCTGCTAGATCCTCACCCCCGGAAGAGGAACCCTGTGGGCTCCATCAAGAGCTATCTAGGCCAACCCTGGAAGCAGAGGGAAGGGGAGGCTGAGGAATTGGCAACGGAGCTGAGAGAAGATGGGTGGAGAGGAGGGCAGGAGGCTGCAAAGGGGGAGCAACCTGCATGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030433-Sbk2:NM_001146329:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.162
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(25.0=100)
A:
NA
C2:
PF0006920=Pkinase=PD(65.7=83.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACCTGTCCTCCATGGG
R:
GGCAGAAGATCAGGACCCCTA
Band lengths:
358-1474
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: