DreINT0131094 @ danRer10
Intron Retention
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48846813-48849418:+
Coord C1 exon
chr17:48846813-48846969
Coord A exon
chr17:48846970-48849290
Coord C2 exon
chr17:48849291-48849418
Length
2321 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTTTTTACTACTCCCTAAAGGAA
3' ss Score
5.9
Exon sequences
Seq C1 exon
AGCAAGATTGTCAGAGTGCTCAACTTATGGCAGAAAAACAACGTCTTCAAGAGCGACATCATTCAGCCTCTACTGGATATGGCAGCAGGTCTTCCACCGCCCAGCGTTACGCCCGTCTCTGCCAGTAGTGTCATACCCATGAACAGCACTACTCCTG
Seq A exon
GTAAGTTGGACGATATAGGTGCATGCCACACAATAGGCAGTGGTCGACCGCCAGCAAAAATATGTGGCCTGTGTCTCAAGATCAAGTGAAGTTGTGCTTTATTGTTATGTGTGGACATATAGTGAAACCATGTCGTGTCTCGCATGGCCACGGTGCTACGTAAATAAACATAATCATAAATATGAGCACAACACTGGACATAAGAGTAACTGTATTTTGTATTTACAAAGTGGCCATATTCATCAATGTAAACACACCAAAAAATAACATTGACATTATAGCAGACACTAAAAAGCCCATTCCTAGCCACTAGACATAACTGACAGGGTATTCGAGTGTCAGAATGTTGTGGGACTGCTGTAGAGGAGTTATTTATAGGCCCACACGGAATTTGCGCGTGCAGATTTCTGCAGATTTTTAGCCCATAATTAATTCTGTTTATTTACTTGAGTAAATGTGTAAATCAGAATGTATTAAGTTTTTATTCAGTAATTTACTGCTTTTTATTTAATATATTAAGGTTTTAGTTATGATACTCCACTGGATACTCCCAAAATAATTCCGCAGAAATTTGCAGATTTTTACCAAAATTCTCTGCAGAAGTAGCAAAAAACATCCGCAGATTCCGTCTGGCCCTGGTTATTTAAAGGGCACCTATGGTAAAAAATCTACTTTTCAAGCTGTTTGGACAGATCTGTGTGTTGGTATAGTGTATAGACCGTCATACTGGGGTGATATGAACACACCCAGTCCTTTTTTTTCAATTTAACTACAAAAAAAAGGGTCGGCCAATTGGAGCTGTTTTCAAATCGATCGCACCATTACGTAGGTGTGTGATTTCCCCCCGCCCACCGAATTGATTGACAGCTGCGCACATTAACATGTTCCGGTAGTCACGTGTATATGTCAACAAGACCAGACAGACATACGCAAAGCAACCGGAAATAAAAGGTCTGTTCTGTTCGCTAGGATTAGCAAGCATCATCAAATGTGATTAAGAGTAAGTTTCACATGTTTAAAGTGTTTTAAAACAGAGTATGTGTGTAATTAATTACAGCGTTTTACTTCAGCTTTACTTCATCAGCACAGCACAGCCGCGTGTCAGAACAATTATAAAAGAAGACGCTTCAATCCCGGTTTGTGGAAGTTAAATCAGGTTTATTTTGTACATTACATTAGCATAACAGATATCCACAAAGTACTTTTGGTTAGCCTTAACTAAGCTAAGCGCGCTCTGTTTGTCTGCCTGCCTGCGTGTGCGCGCGCGCGCGCGCGTGTGTGTGTCATCTTCGGTGTGCGTGTGTGCGTTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGCGTTAACTTTGTAACGATGTTGTGTGTGACTCATCAATGCAACTTCACAATACTGATTAGTAAAGGTTAGTTCTTACTGTAGTATCTCACAAACGCTACGTGAGACCTTCTTCCTTTAAGTCTGTCTGTTGTCTGACGCAGCTGAGGGAGGAGGCATGTAGAAAAAGTAGGCGGGAAAAACTCGTCTTAAAGGCGCAGTACGACAAAACCACCCCCTGCTGGAAATCAGTATAAAACAGCATCTTGTAAAAGGTATAATGAAAAATCTGATGGGTATTTTGATCTGAAACTTTATATACACATTCTAGAGACGCAAAAGACTTATATTAAATCTGAAAAAAGGGGTAACCTAGATGCCCTTTAATAGGGATTATAGATCACAAAATTAAACGGTTTTTTTTTTATTTATTTTTTTTTTTTTAAGCATGACGGTGAAACACAAATGTGGTTATGAATATATTAAAACGTGTTTTTGTTTGTCGTAAAAATTCGTAATAATGACAAAAATTCAAATTTATGGATGTCCTTACTTCCGGGTGCAGCTATGTTGCCGCTGTGACTGGTGCATTCTGGGAAATTGTCTTACCTCTTGGTTTCAAGTGTGGTCCTGAAAAGTCTTCGTTCGAAGGGCTATTCATCCCTTCCCCTTAGCCCTACGCCTTCAAGCTAAAGAGAATTGGGACACCCCTACCCCTTGGCGTGCATACGCAAAACGAGAGGTAGGGGTAAGGGGAAAGGTTAAGGGGTAGAATTGTGATTGGGCCTAAGTGATGACAATTTTCATCGAGTGAACTCTCTTTAAGGCAAAATGAAAGCATGAAAACGTGTTTAGAAGTATTTATTTAGCATTTGCTGTCATTTTTTATTTTTTTGCTGTACCAATGTTCACAACAGTTCTATTACATACCAAAAACTCAATTCTAGTCCAAAATCTCTTCTCGCAATAACATTTTTTACTACTCCCTAAAG
Seq C2 exon
GAACTCCTGCAACTCCAGCCACCCCTGCCAATATAGTGCAGAGTCTTCCAGACTGGGCGTCTCAGATCTCCAACACAGACACTGTGGCTGCAGTTGCCCAGATCTTGCAGAGTCCTCAGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056:ENSDART00000161898:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF048188=CTD_bind=PD(24.2=30.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]