HsaINT0138321 @ hg38
Intron Retention
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154792823-154795139:+
Coord C1 exon
chr6:154792823-154792976
Coord A exon
chr6:154792977-154795008
Coord C2 exon
chr6:154795009-154795139
Length
2032 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTGATGTTCTTTTTAAAAGGAA
3' ss Score
8.11
Exon sequences
Seq C1 exon
AGTAAAATAGTGAGAGTACTAAACTTATGGCAGAAGAATAATGTATTTAAGAGTGAGATTATTCAGCCCCTTTTGGATATGGCAGCCGGGATTCCGCCTCCAGTTGTCACACCTGTTTTGGCCAGCACTACCACTGCTATGAGCAATACTCCAG
Seq A exon
GTATGTTGCTTTAATATAGATTTGTTGTCTAAATATTCTACTCATACTTTTTGGATGACTGTTCATATAAAAAATAATTCGACAGTGCAGGAAAATTTGTCCAGCATTACATAATTGAAAGAAAATATTTGTAGAGAAAAATAAAATTAGATATTATGTTTGTGTGTAATTATTTCTAAAATGTAGAAAACTGATTTTCATTTAATCCACAGAAACATAAATATAATGAACCTTAGAAATTTGGTGTGTCAATTAGATTTTTCCTGATTTAAGTTGTCTGTAACTTCTTATACTTGCATTTGTATCAACTTGGTATTTATAGGATACTAGGGGGACTTAATATTTTTTAAGAAACCCTGAAACAATTATTTAACAAAACCAAAATTTCAAAATCGTGTTCTCTTGAGGCATTTAAATGACTATGATAAAAAATTTTTATCAAAGTAATTTAAAAATTTTTTGAAATTTTTATGAAAAAATTTTTTTCATAATTTTTTCATAATTTTTTAAATAATTTTTTCAAAAATTTTTATGAAAAAATTTTTATCATAGTTCCAGCCCTGCGCAGTGACTAACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGCAGATCGCCTGAGGTCAGGAGTTGGAGAGCAGCCTGGCCAATATAGTGAAACCCTGTCTACATTAAAAATAAAAAAATCAGCTGGGTGTGGTAGTGGGTGCCTGTAATCCCAATTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGCGAGGCGAGATCGCGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAATCATAGTTCCAAGAATTAAATTGGTTAGCATTTCATAATTTTGTATGTATTTTGTGTGTGTGTGTGTATGAACAAAAATTGATGTACTGTTTTTTGAGACCTTGCTCTGTCACCCAGGCGGGTGTGCAGTGGTGTGATCATAGCTCACTGCAGCCTCGACCTCCTGGCTTCTAGTGATCCTCCCATCTCAGCCTCCTAAGTAGGTGGGACTACAGGCATGCACTACCATGCCTGGCTAATTTTTTTTTGTTGTTATTGTTGTTAGAGACGGAGTCTTGCTGTGTTGCCCAGGCTGGTCTCGAACTCTAGGGCCCAAGTAGTCCTCCTGCCTTGGGCTCTGAAAGTGTTGGGATTACAGGCATGAACCACTGTACCTGGCCCAAACATGGTTTTATATTATGTGTACTTACTATAAAATTTTTTTATTGAAGATTGTATTTTGAATATTTCCTCATGTTACTGAATTTTTGTCTCTAAAGTAAGATTTTTAATGGCTGTTAAGTATTGTAGGCTTTAGAAGTACAGTAGTCTCCCCACATCCACAGTTTTGCTTTCCATGATTCCAATTACTTGCAGTCAACCACAGTCTGAAAATAGGTGAGTATAGTACAATAAGATATTTTGACAGATAGGGAAAAAGAGAGAGAGACCATATTCACATAACTTTTTTCACAGTATAGTTTATTATTAGTTAGTGTTGTTAATCTCTTACTGTACCTAATTTATAAGTTAACCTTTATCATAGGTATATGTGTACGTACAGAAAAAAACATAGCATATATAGGGTTTGGTGCTAGCTCTGGTTTCAAGCATCCACTGGAGTTCTTGGAACACATCTCCCAAGCATAAGTGGGGACACTATAGTAACTTAGTTAATTGAGGAGGACAAATTTGGACAGATCCTTTTGGTGGGGGGGGGGGGGTGTGGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATGTACCTAATTCTGTAAAGGATTTTAAGTGATTTTTTCAAAGTGGACACAATAAAATAAAAACAATATGCGTGCATGTGTTTTATAAAAGTAATAAAACAAGTTATTCTGCTTTTTCTAGTCTTAGTTACTTACTTACATATTTATTTGGGGGGTGTGATGTTCTTTTTAAAAG
Seq C2 exon
GAACTCCTGTGACACCTGTTACTCCGGCCAATGTGGTCCAAGGCTTACCTGATCCGTGGGTATCTCAGATAACAAATACAGATACACTTGCGGCTGTAGCTCAGATCTTGCAAAGTCCTCAAGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079:ENST00000367178:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.240
Domain overlap (PFAM):
C1:
PF048188=CTD_bind=PD(24.2=30.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development