HsaINT0138321 @ hg19
Intron Retention
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155113957-155116273:+
Coord C1 exon
chr6:155113957-155114110
Coord A exon
chr6:155114111-155116142
Coord C2 exon
chr6:155116143-155116273
Length
2032 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TGTGATGTTCTTTTTAAAAGGAA
3' ss Score
8.11
Exon sequences
Seq C1 exon
AGTAAAATAGTGAGAGTACTAAACTTATGGCAGAAGAATAATGTATTTAAGAGTGAGATTATTCAGCCCCTTTTGGATATGGCAGCCGGGATTCCGCCTCCAGTTGTCACACCTGTTTTGGCCAGCACTACCACTGCTATGAGCAATACTCCAG
Seq A exon
GTATGTTGCTTTAATATAGATTTGTTGTCTAAATATTCTACTCATACTTTTTGGATGACTGTTCATATAAAAAATAATTCGACAGTGCAGGAAAATTTGTCCAGCATTACATAATTGAAAGAAAATATTTGTAGAGAAAAATAAAATTAGATATTATGTTTGTGTGTAATTATTTCTAAAATGTAGAAAACTGATTTTCATTTAATCCACAGAAACATAAATATAATGAACCTTAGAAATTTGGTGTGTCAATTAGATTTTTCCTGATTTAAGTTGTCTGTAACTTCTTATACTTGCATTTGTATCAACTTGGTATTTATAGGATACTAGGGGGACTTAATATTTTTTAAGAAACCCTGAAACAATTATTTAACAAAACCAAAATTTCAAAATCGTGTTCTCTTGAGGCATTTAAATGACTATGATAAAAAATTTTTATCAAAGTAATTTAAAAATTTTTTGAAATTTTTATGAAAAAATTTTTTTCATAATTTTTTCATAATTTTTTAAATAATTTTTTCAAAAATTTTTATGAAAAAATTTTTATCATAGTTCCAGCCCTGCGCAGTGACTAACACCTGTAATCCTAGCACTTTGGGAGGCCGAGGCAGGCAGATCGCCTGAGGTCAGGAGTTGGAGAGCAGCCTGGCCAATATAGTGAAACCCTGTCTACATTAAAAATAAAAAAATCAGCTGGGTGTGGTAGTGGGTGCCTGTAATCCCAATTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGCGAGGCGAGATCGCGCCGTTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAATCATAGTTCCAAGAATTAAATTGGTTAGCATTTCATAATTTTGTATGTATTTTGTGTGTGTGTGTGTATGAACAAAAATTGATGTACTGTTTTTTGAGACCTTGCTCTGTCACCCAGGCGGGTGTGCAGTGGTGTGATCATAGCTCACTGCAGCCTCGACCTCCTGGCTTCTAGTGATCCTCCCATCTCAGCCTCCTAAGTAGGTGGGACTACAGGCATGCACTACCATGCCTGGCTAATTTTTTTTTGTTGTTATTGTTGTTAGAGACGGAGTCTTGCTGTGTTGCCCAGGCTGGTCTCGAACTCTAGGGCCCAAGTAGTCCTCCTGCCTTGGGCTCTGAAAGTGTTGGGATTACAGGCATGAACCACTGTACCTGGCCCAAACATGGTTTTATATTATGTGTACTTACTATAAAATTTTTTTATTGAAGATTGTATTTTGAATATTTCCTCATGTTACTGAATTTTTGTCTCTAAAGTAAGATTTTTAATGGCTGTTAAGTATTGTAGGCTTTAGAAGTACAGTAGTCTCCCCACATCCACAGTTTTGCTTTCCATGATTCCAATTACTTGCAGTCAACCACAGTCTGAAAATAGGTGAGTATAGTACAATAAGATATTTTGACAGATAGGGAAAAAGAGAGAGAGACCATATTCACATAACTTTTTTCACAGTATAGTTTATTATTAGTTAGTGTTGTTAATCTCTTACTGTACCTAATTTATAAGTTAACCTTTATCATAGGTATATGTGTACGTACAGAAAAAAACATAGCATATATAGGGTTTGGTGCTAGCTCTGGTTTCAAGCATCCACTGGAGTTCTTGGAACACATCTCCCAAGCATAAGTGGGGACACTATAGTAACTTAGTTAATTGAGGAGGACAAATTTGGACAGATCCTTTTGGTGGGGGGGGGGGGGTGTGGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATGTACCTAATTCTGTAAAGGATTTTAAGTGATTTTTTCAAAGTGGACACAATAAAATAAAAACAATATGCGTGCATGTGTTTTATAAAAGTAATAAAACAAGTTATTCTGCTTTTTCTAGTCTTAGTTACTTACTTACATATTTATTTGGGGGGTGTGATGTTCTTTTTAAAAG
Seq C2 exon
GAACTCCTGTGACACCTGTTACTCCGGCCAATGTGGTCCAAGGCTTACCTGATCCGTGGGTATCTCAGATAACAAATACAGATACACTTGCGGCTGTAGCTCAGATCTTGCAAAGTCCTCAAGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-RBM16:NM_014892:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF048188=CTD_bind=PD(24.2=30.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)