DreINT0133564 @ danRer10
Intron Retention
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3797987-3801132:+
Coord C1 exon
chr21:3797987-3798162
Coord A exon
chr21:3798163-3801039
Coord C2 exon
chr21:3801040-3801132
Length
2877 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGC
5' ss Score
8.06
3' ss Seq
TGTGTCCGTCTGTCCTTCAGCGA
3' ss Score
9.82
Exon sequences
Seq C1 exon
AAAGCAAAGGAGTTTGGCTTCGACCAGTCTCTGATGGCACGGTTATGCAAAAGTCTTCACCCCTCAAACTCAAAACTCCCTCCAATTCTTCTACTCAGTATGCAATACCGCATGCACCCAGACATCTGCGAATTCCCTTCCAAGTACATCTACAACAGCGCACTCAAAAATGACTG
Seq A exon
GTACGCACACAATCTGGTTCATGTGTTTTTTCATTTGAAAGTTAAGGCATTTGTAGAGAAGGGAGAGAGATTGTTGTGAAACCCTACTCTTCACCATGTGTAGGCAGGGCCAGTGCAGACAGGAGCAGGAGATTAGGACTGTGTCTGAATTCAGACTCCTCAGGTCATTGAGCGGACCGTGCGTGTGGTGAGTGCTCAACACTGTGAGCTGCTAACTGCAAACTAAAACCATCAAATCTCAAGAAACCAGCTGCCAATGGAAATTACATTGGCAGCAGTTTTAAGGCCTCCAGTAAGCTTCAAACAAAATTTACCTGATTTCTTACAAAACTCATATGAAGTGAAATTCTTTTGTTTGTAAAAGTTTGTTTTTGCGCCTAAACCCAGGGTTCCCAAGCTTTTTAAAACTACTTGAATTTCAGACATGGATTCAAGGCTTGGAAAGTGTACTTAACCATAAACAAATTATTTAAAATCTAATTCAAGCTCTTTCAAGGACCTATATTTGTATTGAGAATGGAGTACAATTCTTGAAATAAAACAAAGTAAAAAAAAACTGAGAAATTCTTAAATTAAAAATCTTAAATTTAAATCTTTTACTTTACTTACTTACTTACTTTACTTACTTACTTACACATTTTTTGGGGGGGAATCTCCTCATTCACCACCAGTGTGAAGCATCCGCTTGGATGACGTGACTGCAGCCATATTGCGCCAGACCACACACACCAGCTGGGTGGAGAGGAGACAGAGTGATAAAGCCAATTATGAAATGGGGATTCAGGGACTGCAGGTTGAGCGCCCCCTACTGGTCTTACTAACACCACTTCTGGCAGCAACCTAGCTTTTTCATGTGGTCTCCCATCCAGGTACCGAGCAGGCGCAGCCCTACTCAGCTTCAGTGGGCGACCATGTGAGAGTTGCAGAGAGCTAGCTTTTCTTTTTTTAACATGAATATTAAATGTTAGTGATTTGTTAAGTACAATAAGGACATGTCACTGCATATGCTGGGGTATGAATTATAAAGGTGCCCGATTTTAAATTAGTGGTTCTTTTAAAAAGTCCTCCAGTCTTTGGTTCATAAAAGCATGGGAACCCCTTAGAGCTAGTATTGGTCTGTCGATTTATGCAATTAGTGTATTTTCTGAGGCTCTGCCTTTGATTGGATGGGAAGGAAAAAAAAACAGTGTCTGGCTGCGACAAATAGAAAAGAGAACAATATTAGCGCTTCTTGTGGAGAAGGCTGTTTGGCATAGGTTTATGAAACCGTTCTTCTCTTGCAGCCATAATTGTTGTGCTTCACTGCAGAACAGAGTGTTTGTGTTCGAAAACCATATACCGTCATTCTGCCTTTACTAGCTTCTTGCCCTTAAATGAAGAATGAAAAATAACTTTGTTTGACGTATACTGGGCCTTTAATTTCACGCAAATTTTAATTTCACGCAAACATCACCCGAATTAGTGTTTGAGCACAGGTGTCGAGCTCCATTCCTGAAGGGCTGCAGCTCTGCACAGCTTAGCCTTAACTCTGATTAAACACACCTGATCAAACGGAGTCTTTAAAAAGGTTACCTAAAACATCAGGGCTCAACAATAAGGACTGCCCAATAGCCTAGGGCTAGCGTGGGAGATGCTCGGGACAGTAGACAGAATCGTTACTGGCCCGATTGGGGCAGTGCTGCCTTGCCACTAAATTTTAATAGATCGCAACATGACCACAACATCAAACTATGAGGCTAAAAGTAAAAACCTGTTTCTGTCAGCCACCTTTTTGTTTTGCAATAAAGTATCTGCACATTTTCCATACTGTTTTATTTTACTGCTAAATATTTTAACATTTTTCAAATATTTAAATTCTAGATTCACAGGCATTATTTTGTGACTCATTATTTAGTATATGTGGCTAAAAGATGGCAGTTCACTTCTTCTTTTTTTTTTGTTTTTTTTTTTTTTGTTTTGGTGGAGCCAGTGAAAATTTTGCCAGGGCAAGTAAAAAATTTAACCTTTTTACCTGATCAGGCCAGTAGGAAACAAAATCCTTTGCGTTGAACCCTGAACCTACAGGTAAGTGTGTTGAGGCAGGGTTGGAACAAAAACTGTAGGGCTGCGGCCCTCCATTAAACTGAGCTTGACACGCCTGTGTTTAAGAATACATCGTGCACCTTTTCATGTACAAAAGACTGAATCTGATTCCGCATCTTTATCTAATTGTATGTCAATTTGTGAATTAATTTTTGCCAGGTGCATGTTAACAACAGAAATGCAGTGTATTGCAATGGAGAATGCGTTTAGTATAATAGTAAATTTATTTTATGTTAGTCTTACTGTGACCTAGACCTTTAGATGGCATTCTCATTCCTTTCTGTGATGCTAATGCTGCTTGCAATGTTTTTGCAGATTCATCTGAGGCTTTATTAACCATATTCATGTTTCATGCTCGCTATTGCTTTAAACTTAAAGGGACGGTGTACCCAAAAAAGACAATTTCCACTCGAGTGGCTCTAAACTTGTGAATGTCTGTCTTCTGTTCGACACAAAGCAAGATGTTCTGAAGAATGTTGTAGAAAAGCAATTATTGACATCCATAGCAAAACAAAAGTACTATGAAAGTAAACCTATAAATGAAGTTTTGAGTTTCTTCTGTTAAACACGAATGAAGATATACCAAAAAACATGTTGGAGAATACAATATACAAGATGTTTTGGTGCATCTTCATTTGTCTTCAACAAAAGAAAAAACTCATCCTCCATTTGTTTTAAACCGGTTTGAGTAAATGATGACAGAAGTATAATCTTTGGCTGAACTCTCACTTTAACAGATTTATTTTATGTTTAGAAAATGAGTAAAACTTTAAATTGTGTCCGTCTGTCCTTCAG
Seq C2 exon
CGAGACTGCTCAGAAGCGCTGCTCCCTCAGCTGGCCCTTCAAGCCCTACAAAGTGTTTGACGTGATGGATGGCAGAGAGACCAAGGAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996:ENSDART00000149777:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(0.1=0.0),PF130871=AAA_12=PU(27.7=86.4)
A:
NA
C2:
PF130871=AAA_12=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]