DreINT0133594 @ danRer10
Intron Retention
Gene
ENSDARG00000100594 | sez6l
Description
seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
Coordinates
chr10:44818842-44819942:+
Coord C1 exon
chr10:44818842-44819036
Coord A exon
chr10:44819037-44819906
Coord C2 exon
chr10:44819907-44819942
Length
870 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TATTGTCCTTTTTATTTCAGCCA
3' ss Score
7.79
Exon sequences
Seq C1 exon
CAGAAGAATCCGTGTCCTGTGAGAATCCCGGCCTTCCCGACAATGGCTACCAGATTCTGTCTAAAAGACTTTACCTTCCTGGAGAGTCTCTGACCTTCATGTGCTACCAGGGATATGAGCTTATCGGTGAAATGGCCATCAAGTGCATTCTGGGAAATCCTTCATTCTGGAGTGGACCATTGCCCCTTTGCAGAG
Seq A exon
GTATGGAGAGAGTGAGGGTATTTAAAGAAACCGTGTTTACATGTTAAAATCATTCATTCATTCATTTCCTTTTCGGCTTAGTCCCTTTATTAATCTGGGATCACCACAGCGGAATGAACTGCCAACTTATCCAGCATATGTTTTACACAGCGGATGCCCTTCCAGCTGCAACCCAGCACTGGGAAACATGTTAAAATATAGGATATTTTATTGTTTATATTGTAAGAAAGGGTGATAAGGTGGCTTAGTGGGTAGTGCTGTCGCCTCACAGCTAGAAGGTCGCTGGTTTGAGCCTCGGCTGAGTCAGTTGGCGCCTCTGTGTGGTGTTTGCATGTTCTCCCCGTGTTGGCGTGGGTTTCCTTCGGGTGCTCCGGTTTCCCCCACAGTCCAAACACATGCGCTATAGGGGAATTGATCAACTAAATTGGCTGTAGTGTACGAGTGTGAGTGTGTATGGGTGTTTTCCAGTACTGTGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACACATGCTGGAATAGTTGGTGGTTCATTCCGCTGTGGCCACCTCTGATGAATAAAGGAACTAAGCCAACGGAAAATGAAAGAGTGAATGAACATTGTAAGAAACTAAGATTTAATTTTACTATTAAAATATTTTTATGAGCTTTTATTACATTTGTATTAATTAATAATTATGGTTATTAATATTAATGCTGTTTCTCTATTCCTTTTTATGAAACATTTCACATTTAATTCAATGTGCTCCTTGCAGATCCTTTTGTAATTATTGATTCACTTGCAATTTCATAGTAATTTTTAATATTTCAACTTGTGCTTTTTTGTGTGTGTAATATGTGTATTCATCCAATATTGTCCTTTTTATTTCAG
Seq C2 exon
CCAATCATGAATGTTCTGGCAATCATGCATTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100594:ENSDART00000172128:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGAATCCGTGTCCTGTGA
R:
GCATGATTGCCAGAACATTCA
Band lengths:
223-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]