RnoINT0133926 @ rn6
Intron Retention
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50233338-50235013:+
Coord C1 exon
chr12:50233338-50233532
Coord A exon
chr12:50233533-50234980
Coord C2 exon
chr12:50234981-50235013
Length
1448 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GCTTCCTATTTCCCTTTCAGTTA
3' ss Score
10.05
Exon sequences
Seq C1 exon
CCGAGGAGTCCCTGGCGTGTGACAACCCAGGGCTGCCTGAAAACGGATACCAGATCCTGTATAAGCGGTTGTACCTACCCGGAGAGTCCCTCACGTTCATGTGCTACGAGGGCTTTGAGCTCATGGGCGAAGTGACCATCCGGTGCATTCTGGGACAGCCGTCCCATTGGAGCGGGCCCCTGCCCATCTGTAAAG
Seq A exon
GTAAAGTGACCCAAGGAACCAGGGAGAGGGGAAACTGAGCTTGCTCTGAGGGCGAGTTTCATGGAATCCAAATCCAGTGGCTGCCTGTCCAGTCTGGTTTCTTTTCTTTTTCTTTTTCTTTTCTTTTCTTTTTGTCTTTCACATATGTGTTTCTTGAGACAGGGTCGCATGTAGCCCAGTCTAGCCTTGAATTTCCTTTGTAACCAAGGCTGGCCTTGAACTCCTGTTCTCCTGTTTCTACTTCCCAAGTTCTGGGATGGCAGGTGTGCACTACCAAGCCAACTCTTGATCCCGTTGTGTTTATTACTATAACAAAATACCTGAGAATGGATACTTTATGAAGAAGTCTGTTTGGTTCAGGGTTGTGGAGGTTAAGGCACGACTGGGCACCTCTGGGGGATGCATGCCTCCTGCTAACGTAGGGCCACCCCACGGAGGGACAGAGAGAACACACCAGCTCTTACAGAGCCACTGCAGCCCAGTCATGGCCCCCTCTGAAAAAACATCAACCTATAAATCTGCGCACTAATTCTCCAGTTGAGAAGCCAGCCAGCTTCTCAGCAGAGGGCGTCACGGCTCCATTGGGGGCTTCAATTAGTCTAAATCTAATCAGGAGCCCTGGGACTTGCAGAGCGTGCATGCACGGTGGCCAGCACAGCCTGCCCGCTGTGGGTGTAATCTCCCGCTTAAGCCTTCACTTGCACACTGCACCGGGGAGTGTCCTGGTGGGCGCAGTTCAGTGTTCGGCCAGCAGGGTGGCGCTGGTAATGGAGCGTGGGCTATCATCCCAGCACCTTGAACATCAGGGCTTTATAAGAAATAGGAGTTTATGAAAACAACTTATAAGATTACTGCTCCCAGTCAATAAATAGGGGAGATGAATATAGTCGGTATCAGGATCCTGAGTCACACATCATTGGAAACAATATAAAAAGACCCCACGAAAATATTATATAGTTAGAGGTGGTGCTATACGCCCACCAGAACAGCAACTGGGAGGCTGACAATGAATGTTCAAGGCCAGCACAAGAGGCTGTCAAAAAAAAAAAAAAAGCAAAACAAAATGTTATGAGCTGTGATAGAGGCTAAGGCTGTGGGTTAGAAGCTGTGTGACCTCCAAGGCCTCGCCGCACCTCTCTGAACCCATTTGCTCTCTGTAAAGCCATGGTAATGAACCATCCCGTGCAGGAGGGGATTGGCAAGGGGTGGGCAGGGATGCACGAGCTCTGGGCATGGTACAGAATGTGTGGCATATGCCACCGCCATCCATGACACTGAGGTTGCTCACCCGTCTTGTTCCTCTTGACGTCACGGGAGGTACCATGGGGAGCTGTCCTGCTAGACACCATGGGCACCACGCTCACACCGCACTCTTGGGGCCCAAAACCTCTGCTTCTGCAAGCAGTGAACTCCCTAGGCATTGACTCTGCTTCCTATTTCCCTTTCAG
Seq C2 exon
TTAACCAAGACAGTTTTGAACATGCGTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612:ENSRNOT00000032193:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCCCTGGCGTGTGACAA
R:
TTCCAACGCATGTTCAAAACTGT
Band lengths:
222-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]