GgaINT0006827 @ galGal3
Intron Retention
Gene
ENSGALG00000005577 | SEZ6L
Description
NA
Coordinates
chr15:7353096-7353814:+
Coord C1 exon
chr15:7353096-7353290
Coord A exon
chr15:7353291-7353781
Coord C2 exon
chr15:7353782-7353814
Length
491 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
ACTCTCCATTTCTCTTCCAGTCA
3' ss Score
9.81
Exon sequences
Seq C1 exon
CGGAGGAGTCTCTGGCCTGTGACAACCCAGGGCTGCCAGAAAACGGCTACCAAATCCTCTACAAACGCCTCTACCTGCCCGGCGAGTCTCTGACCTTCATGTGCTATGAGGGCTTCGAGCTCATGGGGGAGGTGACCATCAAGTGCATACTGGGACAGCCGTCGCACTGGAGTGGGCCACTGCCCATCTGCAAAG
Seq A exon
GTAGTGCATAGCAGAGCAGGCAGCACCCATTGGGGTGGGAAGCACCCATTGGGATGGAGAGCACTCATTTGGATGGGCAACATCCATTGGGATGGGCAGCACCCATTGGGACGGACAGCACTCATTGGGATGGGCAGCACCCATCGGGATGGGCAGCACTCATTGGGATGGGCAGCACTCATTGGGGTGGGGAGCACCCATTGGGATGGGCAGCATCCACCAGCTCTGGCTGGTGCCACCATTCCAGGCAGAGACGTCCTGCACTTTTTCTTGCCCAGCCAGCTCAGTCCCTGTGTGAGCACTTAAAGAGGGCAAATGATCATTAAGTGCTGAAAGTGTGCAGCACATTCTGTGACCAAATGGGGTATGGAAAGCCTGGCACAGATTCCCATGGTAGCCTCAGTCTGGATATGTGAATCCCTCTGCATGCAAAGCTGTAGCACCCAGTGCACACCCAACCACCTCCCAGTAACTCTCCATTTCTCTTCCAG
Seq C2 exon
TCAATCAGGACAGCTTTGAGCACGCTTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005577:ENSGALT00000008952:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTCTGGCCTGTGACAAC
R:
CTTCCAAAGCGTGCTCAAAGC
Band lengths:
223-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]