HsaINT0148443 @ hg19
Intron Retention
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26761338-26769449:+
Coord C1 exon
chr22:26761338-26761532
Coord A exon
chr22:26761533-26769416
Coord C2 exon
chr22:26769417-26769449
Length
7884 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTTCCTGATTTCTCTTTCAGTTA
3' ss Score
10.95
Exon sequences
Seq C1 exon
CGGAGGAGTCCCTGGCATGTGACAACCCAGGGCTGCCTGAAAATGGATACCAAATCCTGTACAAGCGACTCTACCTGCCAGGAGAGTCCCTCACCTTCATGTGCTACGAAGGCTTTGAGCTCATGGGTGAAGTGACCATCCGCTGCATCCTGGGACAGCCATCCCACTGGAACGGGCCCCTGCCCGTGTGTAAAG
Seq A exon
GTAAAGAAACCTACTCACCACACAGGGTCCACGGGGCCTGGAGATGTCAGGCTCCTGGCTCACAGGAGTTCTGAACTTGCTCTAAAAAATTGGACTAGGAGTTCGAGACCAGCCGAGGCAACATAGTGAGACCCCCATCTCTACCAAAAAAAAAAAAATTAGTCAGGCATGGCGGCACACACCTGTAGTCCCAGCTACTCGGGAGGCTGAGATGGGAGGATCACCTGAGCCTAGGAGGTCAAGGTTGCAGTGAGCCTTGATCATGCCACTGCACTCCAGCCCGGACAGAACGAGACTCTATCTCAAAAAAATTAAATTAAATTTTAAAATAATAGAGCTGAGCTGCTGTACTTCATTAAATCTAAGATGTCACCATGACTTTATGCACCACTAAAAAAGAAAAAAACATGCTGCCAATTATACTATGACACAATGTCTTCTCCTGGCTTAGCATTTTTATTTTTACTTACTAAAGGAGCTTTTGACCAGGCACAGTAGCTCACGCCTGTAATCCCAACACTTTGGGAGGCTGATGCAGGCATATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTTAAAATACAAAAAAATTAGCTGGGCGTAGCGGTGCATGCCTGAAGTCCCAGCTACTCGGGAGGCTGAGGCAAGAGAATCACTTGAATCCAGGAGGCAGAGGTTGCAGTGAGCCGAGGTGGCTCCACTGCACTCCAGCCTGGGTGACACAGCGAGATTCTATCTAAAAAATGAAAACATAAAGGTCTTTAAGCTTTTTATCATATATCACAATTATGAAAATGTTCAAATGAAAATATAAGCAGCCCAGGTGCAGTGGCTCACACCTGTAATCCTAGCATTTTGGGAAGCTGAGGTGGGAGGATTGCTTGAGCCGGGGAGTTTGAGACCAGCCTGGGTAACATGGTGAAACTGTCTCTACAAAAACAAAATAATGATAATAATACAAAAATTAACCTGATGTGGTGACGTGTGCCTGTAGTCCCAGCTACTTGGGAGGCTAAGGTGGGAGGATCACTTGATCCCAGGAGACAGAGGTTGCAATGAGCTATGATCATGCTACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGTCTCAAACAAACAAACAAACAAACAAACAAAATACAAGCAAAATAAACTGGTTCCAGTGTATTTAAAACTTCCCCACCTTCAAAGTCTGGCACTTTTGATTTTCTAAATTATTACTAAATTTTTTTGTAGAGACAGGGTCTTGCTATGTTGGCCAGGCTGGCCTAGAACTCCTGACCTCAAGCGATCCTCCCTCCTCTGCCTCTGAGTAGCTGGGATTGCAGGTATGAGCCACCACACCCAGCTGTAGAATCATTTTTTACTCCAAGTCTTCAACATCCTATTTTTCCACTCAATATCGCTCCTGTTGAATGTCATTGTGTACTAAAATATATATACATTTACATACATACATAGCTCCTGTCCCATTAAAGCATCAGGGATGCAGAATTCTGTAGGAACGTCCATAACGAACTAAAGTCTTTGATACAAGGGGCTTGCAGTTACATTGAGGCAGGGCTGGGACGAGTCTGAGGCAAAAGAGGTGCCTGAGGTGAAAAATGTAAGGAGGTGACCAAGCGTCCCGTAGAACAGCCTTAAAAAAAGAGTCTCCGTACACTTCTCGCCCTAGACAGCTCTCGCCTTGCCCTAGTCCCGGCCCTGTGATCCAGCCTGGTTTTTGTTGATTTGTTTGTTTGTTTTTGTTTGTTTGTTTGTTTGGAGACAGGGTCTTACTCTGTTGCACAGGCTGGAATGCAGTGGCGTGATCATTACTCACTGCAGCCTCAACCACCTGGGCTCAAGCTATCCTCCTACCTCAGCCTCGCGAGTGGCTGGGACCACAAGTGCACGCCACCACGCCCAGCTAAATTTTTTTATTTTTGTAGAGATGGGGGTCTCGCTATGTTGCCCAGGCTGGTCTCTACTCCTGGCCTCAAACGATCCTCCCACCTCGGCCTCCCAAAGTGCTGGGATTACCGCATCTGACCTCTGCCTGCTTTTGACCCCTGCTTAGAGAACCCTGCTTAATTATTTCCCACCTCTTGCACTGCCTCCTCACAACCAGTTAGTTCCCATGGGTTAGGAGTGTTCCTCCACTGCCTACAGGGTGATCTCCCAGGGCGTTACCTGGCGTTCTGCAAACCCTAATACTCTTAACGCCCCCAGTTTGTGCACACGGGGAATCGTGAGCGCCACCTGGTGGCAGCTATTATTACACATTATTGCTTTAAGCCTCGCCCCCACCTCCCAGATGGTGAAGTGAGAAAATTGCATCTTAGAATCCATTGAACACTCATCACTAAAATTAAGTTGTAACACACTAAGTAAAATTTGGATTCGTTTATCTGGACTTTTGAAGTGCACAATCAGTAATAGTAACGGAAATATGTTCAGTGTTTTAGGCCAGTGGATCTTAACCTTTATTGCTTTAGTGCCCCTTTGAGAATCAGGCAAAAGGCTCGAATTTGCCCTCCAGAAGGAACAGAAGCATGAAGTTTTATGTCTCTACTTGGGAACCCCTAACTTCAGTGGATCCCCAAATGCCTTATTCATGAACCCCAGCTCTGAGGCTTAAAACTACTTTCCCAGTTAGTTTGTCCACTCCGAGGTATATTTCCAAAAGAAGTGAAACAGGTATTTAAGCAAACCCTGTCTAAGAATGTTTATAGGAGCACTATTCACAATAGCCACGAGATGGAAACAACCCAAATGCCCACCAACTGATGAATGGATAAACAAAAGTGTGGCAGAAAAAAGGGAATATTATTCAGCCATTAAAAGGAACGAAATACTGACACATACCACAACATGGATGAACCTCAAAGCCGTTATGCTGAGTGAAGGAAGCCAGACACAAAAGGTCACATGTTTTAGGGTTCTGTTTCTAGGAAACATCTAGAATAGGTAAATCCATAGAGACAGAAAGCAGAGTCGTGGTTGTCTAGGGACTGCTTACTGAGTATGGGGCTTGTTTTGGAGATGAAGAACATGTTTTGGAACTAGGCAGAGGTCATGGTTGCGCACCATTGTGAATATGCTGAATGCCACTGAATTGTAACACTTTGAAATGGTTAATTTTATGTTATGTGAATTTTATCTACCTAAAAAAAAAAACAATTCCCCTGAATCACCTCTGTTAAGTCTTATGACCACTGTCTAAGATAGGTGAGCCATCTTACCTGTTTTACAGATGTGGAAGGAGAAGCTCAGAGAAGTTAAGTGATTTTCCCAAAGCCACACAGCTAGTACAAGACAAAGCTAGGACTTGAACCCGCATCTCATGACTGTAAATTTCCCGCCTTCAGGGCTACTAAGAAAGACCCCCAACCAGCCAGTCACCGCAGCATGGAAACCTAGGTGTGTTCACACATTCCCGAATCTAACCCAGATCTCCCAAAGCAAAATCATTGAGAGGCGGGCCTGGAATAAGCCTTTTAACAAGCTCTCAAATGCACTTTGAATGTGAGAACCATTTAAGGCCGTGATTTCCAAACATAAACGGAGTCCTGAGCCCTTTCCACGGAGATTCTGATTCACTGGGTCTAAAGCAGGACCCAGGGACCAGTTTAACTAACCACACAGGTGAATTGTATCATCAGCCAAGTATGGGAAACACTAGCATGAGGGTTGCAATTTAATCTTACCAGGTATCAAGCAGGGGCTCATCACGTGAATGACAATGACTTATATAAGCAGTTCTTTTGTTTTTTTTTTTGAGACAGATTCTCGCTCTGTCCCCCAGGCTGGAGTGCAGTGGCTGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGCATTCACGCCATTTCTCCTGCCTCGGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGTTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATTCGCCCACCTCTGCCTCCCAAAGTGCTGGGATTACAGGCGGAGTCACTGCGCCCGGCCGTAAGCAGTTCCTAATAAGAGAACAAGGGGTCCTTTTGAAGAGCAGCGAACAGTAAGAAATCCACAATTAGCATTCAAGACAGCTGCCTTCCCTCATTCCCCCATAATTTTGACTAAGTCCAGCCCAGTGTTTGAATTTATTTTATTTGTGTATTTTTAATAGAGACGGAGTTTTGTCATTTTGCCCAAGCTGGTCTTGAACTCCTGGGCTCAAGGGATCTGTCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCATACCCGACCTGAATTTATTTTTGATAGCACAGGAAACCTGCTTTGCAGAGCTTAAGTATTGGGAAGTTCCTGAGTAAAGATTGCCTGTAAACCCTCTAACTGTCACATGGACATTAATAGAAATTAATTTGACATTGTTGATGAGTTTTCTGCAGGGAAGAAAAATTAGCAGGATTTGTTTTTTAAGAAACCTTGGCCGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACGAGGTCAGGAGTTCGAGACCATCCTGGCTAACACGGTGAAACCTCGTCTCTACTAAAAATACAAAAAAAATTTAGCCGGGTGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGACAATGGCGTGAACGTGGGAGGCGGAGCTTGCGGTGAGCTGAGATCGAGCCACTGCACTCCAGCCTGGGTGACAGAACGACACTCCATCTCAAAAAAAAGAAAGAAAAAAAACCCTAAATAAGAAAACCATGAAAAGGGCCACTTTGGCCTGGACAACGTGTTTGTATCTGCCACGGTAGCTTTTTAAATTCTTCTTGGATTAATTGCAAAGGTATCTCATGGAACAAGTAGAAGAAATCAGAGCTTCAAATGGAAGGAGCAGTTTTCCTCTCTCCTCCATCCCTTTCTTTCTTCTCCAGAAGCCAGTGCTAATCACCTGAATTTCCAGTGTCACACCTTTCCCTAGTCTTATACACATAGACATATTTGGAAAGAGAGAGGGATGTTTGTTTTTGTTTTACAGAAAAAAAAAAAGAAAAGAAAAAAAGGCTGGGTGTGGTGGCTTACACCTGTAATCCCAGCACTTTGAGAGGCCGAGGTGGGAAGATCACTTGAGCCCAGGAGTTCGAGACCAGCCTAGGCAAAATAGTGGGACCTCATTTCTACAAAAAATCAAAAAATTAGCGGGGCATGGTGACACACTCCTGTAGTCCCAACTACTTGGGAAGCTGAGGCAGGAGCACTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCCATGATTGCACCATTGCACTCCAGCCTGGGAAACAGAGCAAGACCCTGTATCACAAAAAAAAAAAAAAAAAAAGGGAGGGAGGTTCATATCATGCTGTATTCTGTGTTTTACTTATTACAAAAGTAGTGCCATGTTATTTTTTTTATTTGCCACCCGTCATTCCACACTTTGCTTGTTCCCCAGTGCATTCAGCCCTTCCTCTGTTGATGGAGACATCAGTTCTCTTCCAGTTTTTTGTTTGTTTTGTTTTGCCAAAAAAAATCTTGCCCATGAATCCTTGGATGCTGGCACTTTTCATCCTGCAGGACAGATTCCTCAAAGCAGGATTGATGGTGTGGGCAAAGATCTATGGATATCGAGTTGTCCTGGATGTCACCAAATCGTTTCCCACAATTGGAGCAATCCACGCTCACCAACAATGTGTAATATGTCCATTTCTCCACCTCCTCGCCAGCACTGTATGTTTTCAATTTTTTTTTAATGCTGCCAAACTGAAAAGAAAATAAAACTACCATCAGAATATACACAAATGTAGCTGGGCATGGTGGTGTGCACCTGTAATCCCAGCTACTTGGAGGCTGAAGTAGGAGAATCGCTTGAAACCGGGAGGCCGAGGTTGCAGTGGGCTGAGATTGCACCACTGCACTCCAGTCTAGGTGACAGAGCAAGACTCTGTCTTAAAAAATAATAATAATATACACAAATGACAAAAAAAGGAAAAAAAAAACACGAAAAGATAAAAAGAGGCTCCATTTTGCAGGTGATCCCTGAAACCTCTCTTTTCTATGGGCTAGTATCTCTAGAAGCCCCACAAGGTCAATCAGCTCACTGCCTTCTCCCACAACTGTGATGGAATTGCTAGCAAGAAAGGCTCTCAGGAGACCCCTGCACCTTTCTTCCCTCTCCATTTCCACTCCTGAGATCCGTCCCACCACCAACTCTGTAAGGAAATGAGAAATCACTTCCTCCTCAGAAAAAAACTGGGATGCATGACATTGTGGTATGCAGGAGGGGAAGCAACTCAGTGCCAATGTGAGGCCACCTGACTGGGACTTGGGGACCCCGGGCTCCAGTCCAGTTCTGCTGTGGACCACCTGTGTGACCTTGAGTGAGCCCCCCTCCCTCTCTGACCTTGGTTTCCCTTTTTGTGAAATAACTGGGGGAGTCCAGATCAGAGTTTCTGAAGAGGAGCCAGTGAGCCCACTGGATGCATCAGAACTGCTGAGGCATTGGTGAGACCTGCAGAGGTCCACCGCTGAGAATACCGCTCTGACAAGTCCCAGGAATGGCCCAGGAATCTGCATTTAACATGCCCTGTGGGGTTCATGAGCACAGGGCTCCAAGGAACACATGATTCAATGCCTCCTCCCAGTTCTAAGATTCCATGGACATTCACGCACTCTCACTCAACCACGGTGCAACTCACATCTTGGGGCAGGACCATCTGCTTCAATCTTTCCATTTTCTTGATGCCAAAGCTGCAGAGAAGTGTGCACTTAGTTAGCCAGCTAGCTTTTCAGCTGGTTTTGTCATCATGGTGTGATGATGGCGTAAACCAGAGAGTGACTTTAACCAAGGCATGGATTAGGGTGTCTTGGGATTGGGGACATCAGTATAGCTAAGCCTTTGGTGGCCACTCCCTCCTATCCCCTAATGCTGCAATTTTTTCATCAAAGTCCTTCATGCTGGGGTTTTGCATTCCTGTAATAAACATCCATCCTTGTTGGTATATTTTTGTGCTTAGCTACCATGATGACTGATGACAAAGATGGGGTGCCAGTCCCCATGATGTTGAACCTCCGGAGAAGTTTTACAAAAAACATAAATGATTAAAAATAGTTTCACATGGGATACAAAGCCTCATCAATATAAAAGGAATAAAAATGAAATTAGAGAGGTTTACATAGATAGTCTTCAAAACAGGAAAACAGTTCCACCTCTGGCTGGATTTTGTATGAAGGTCTGGGGCCTCGCAATTCATTCGTGCTTTGCCCCACATGAAAATGATGAAAAGACCCTAACCACATAATTGAGAGCAGAAACCAGAGAGCTTGAGCAGCCCAGACTGAAATCCTGCCTCCATCACTGAGAAGCTGTGTGATGTCAGAGAAGTCACTTCACTTCTCTGAACCTCTGTTTGCTCATCTGTAAAATGGGGATGATAATAGCATTGACCTAACAAGATTGTTATGAGGATTAACTGAGCAAATGTATGTAGAGTTCTTGGCACAATTTTGGACACGCGGTGAGTGTTCAGTAATTATTCACTATCACTGTTGTTGATCTTGGGTCTTATCTATCTCATCTTCTCTTGGTAACTTAGGAAGTGAATAGTCCAGGCACGTTCACTGATTATAGTGGCCCAAGATAAGTAAAAACATACCACTAACTTCACCAAAGCATGGCATGGGCTTTTGCATCAAATTTTTTGGCCTCATTTCATGCAAACGAAGTGAATTCACTTTACATTGACCAATGCTTCCTGATTTCTCTTTCAG
Seq C2 exon
TTAATCAAGACAGTTTTGAACATGCTTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-SEZ6L:NM_001184773:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)