DreINT0135172 @ danRer10
Intron Retention
Gene
ENSDARG00000103628 | si:ch1073-80i24.1
Description
si:ch1073-80i24.1 [Source:ZFIN;Acc:ZDB-GENE-131121-169]
Coordinates
chr17:48934038-48934273:+
Coord C1 exon
chr17:48934038-48934121
Coord A exon
chr17:48934122-48934205
Coord C2 exon
chr17:48934206-48934273
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
ATTCTCTTATGTAATCTTAGATT
3' ss Score
5.62
Exon sequences
Seq C1 exon
TTGTACTCATTGAATGAATACAAGCCACCTATCTCCAAAGCCAAGATGACCCAGATTACAAAGTCAGCAATTAAAGCTATAAAG
Seq A exon
GTAGGTTTAAAAACAAGGTAACACAACTTTAAGGCCATCTTTAAGTTCTTCTACTAATTCCTCAATTCTCTTATGTAATCTTAG
Seq C2 exon
ATTTATACTAGGGGTGTAACGATTCACCAGTGCCATGGTTTGGTACAGTTCACAATACTGGAGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103628:ENSDART00000171615:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTCATTGAATGAATACAAGCCA
R:
CGTGGCTCCAGTATTGTGAACT
Band lengths:
151-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]