BtaINT0128937 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92829887-92834995:+
Coord C1 exon
chr9:92829887-92829970
Coord A exon
chr9:92829971-92834950
Coord C2 exon
chr9:92834951-92834995
Length
4980 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTCTTTTTTTTTTCTTTTAGTTC
3' ss Score
11.1
Exon sequences
Seq C1 exon
TTGTATTCCCTGAATGACTACAAGCCACCCATTTCTAAAGCGAAAATGACCCAAATTACTAAGGCAGCCATCAAAGCTATAAAG
Seq A exon
GTGAGTAACACTTTTTACTCTGCTGTTTTCAAAAGGAAATACTCCACTAATATTTTGGAGGAAGGTTAATTTTTACAGATTATGTATTTTCTTCATCTTTACAAAGTTAGTACATGTTCCAAGGTTGGAAAAACACAAAAATGAAAATCTGTCACGTACATACCCTCCCAACTAGAGATAAACATTTAATATTTTCATAAATATTCTTACATAAACTTTGAAGCAGTCATTTTCCCTTTTCATAGGTAAGATTTTGGATTCAGGCACATTGTGGAGAATGTGTTTAACACTGTTATTTGTCACACTGACTTTATAGAATCTTGAAATACTAGTTAAGAAGAGTTTTCTAAATAAAACTTAATGTGTTGGTTTTTTTATCCTATTGATTATACTATAGATTTGAAAATGGACCTTTATGGAAAATAATTGGATTACATTGTACATAGGACATTTAAACTCTGGGAAGAGGCCACAGGTATTTAGCTGTTACTTTGACACAGTAGTTTTGAACCTGTGTTGATATATGGGTACTGCTACTGCTTTGTCGCTTCAGTCGTGTCCGACTCTCTGCGACCCTGAAGACGGCAGCCCACCAGGTCCCCCGTCCCTGGGATTCTCCAGGCACGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCAACTCTTAGCAACCCCATAGACTGCAGCCTACCGGGCTCCTCCATCCATGGGATCTTCCAGGCAAGGGTACTGGAGTGGGTCGGCATTGCCTTCTCTGTGACTTATGGATACTTCTGAAAATCTCAGACAATTGGACTGTCCAGAGAAATACACACATATAAAAAATTTTGCCTCAGAAGGTTGGACTGTTTCTAGAGAAATGCACATATGTACAAAATTGTGAATAGAAGTTCTTGGCTTTAGGGACCTTCTGAAGCTCAGCCATAGACACCTCTCCACAATGTCCTTGTCCCCAAAGCTAAGACTCCCTATTCTAGTCTGGTTGTTAAAAGTGAGTATGAGTGAGTGCTTATTTTTAATTAAGTAGATCTGCTGTAGATTTTCAGTGATATGTTTTTCTACTCTGTGTAAGAACATCAGTCATAACCAGAGGCACCATTATTTAAGTAAGTTACCTTTATTTTTTTGTTTTTGTTTGTGTTTTTGGCCTCACAGAGGAGCTTTTTGAATTTTGGTTCCTCAACCAGGGATCCAGCCCTCGGCTCCCAGCAGTGAAAGCGCTAAGTCCTACCCACTGAACTGCCAGGGAATTCCCTGGATAAGTTATCTTTGAATAACAGCATTATCTGTTAGATTTAACAGATGATTCTTCATAGACAGTCTCTATTAGGAGAAAATTTAGATAGTTGATTTTGCAGCATTCTAACGGCCAAACCTTAGTTTTCATACTTGTAATCAATGTCTAAACAGTATTAGAGTTCAAATGTAGAATATGAAAGAGAGATAAGGACAGTGAGCAATAAACACGTTTAACCTGGAGAATTTTCTTCAAAGAAGTGATTTTTCAGGGACTCTGATGAGCAATAGTTTCTTGTGCTTTCTTTTTGTTCTCCATCTTTGTGGTCTGATTTCTGTGTGATCCTGAGAGTGTGCAGCATACATATTATCATTTTTGTTCTGTTAAATGGTTGATGCATTTTTTTTTTTTCCGAGTTTTCATTCTCTGAGTGGTTGATGCATTTTAATAAAAGCTTTTGTTGGACAGAATACTTTTTAATTCATGACCTTTAAGGAATAGGTATTAACATTGTTTACATTTTTCAGATGTTGGAAGTGTCTAAGAAAATTAATTTGCAACAGTCAGAATAAAAACAGCTAGATTTTAATTTTTCTCTTAGTCAAGAGAGAAAGCATGGTTTACAGTCTAAACATGGTTTACTGTACTATTTTGATTTACTGGTCTTAGTTTTTTTAATTTTGAAAAAATAAAAGCATGTTGCAAAATACAGTGAGCAGTACATAGCCGCTTAGCATTGCCAGGTATTAGCATCTTGGCTAGTATATTTAGTTAGTTCTCTGCATGTACACACAGACACACACACATACTTTGTCAGGTTTTTTTGACTGAGTCATTTGAGAACTCATTTCAGAATTCATTTAGAATAGTACATAATCCCTAAATACTAGAATTTTAATGTCCTAAAACAAAGAGATTTCATAGATCAGCAAAACACATCCCATGCAAGAAATTTTACTTTGATGCAACATTATTATCTAATATAATCTACACTTTGATTTATCAGTTGTCTCAATACTAACTTTAGTAGCTAATCCCTGCACTTGTGCATTTTCTGGATCCGGTCAAGATCCTGTCCTGTATTTGTCCTTTACCCAGCCTTTTGCTGTGTTTTTCTTTTGTTTTTCATTGACATTTTTGAAGAGTTTAGACCAACGGTTTTGCAGTACTGCATTACTTTAAACTGAATTTGATGCATATATAAATTGATATTTGAACTGCCTTTTTCAGTTAAATGACACTGTGTTTCATGTTAAGGTAAGTCATTGGTTTTTTGTCAGTGTTAAGAGATGATTATTTTGATGGGTGTTTGTTACCATTGCACGCTGTCAACAAAACCTCTGATCACCTGTTATGGAAAAAGACCTATGTGAATAGAATCTTCGAATTAACATTTAGTAAGCTAACATTGGAAAAGGCAATGGCACCCAACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTCAGTCGGACACGACTGAGCGACTTTACTTTCACTTTTTACTTTCATGCATTGGAGAAGGAAATAGCAACCCACTCCAGTATTCTTGCCCGGAGAATCCCAGGGACAGAGGAACCTAATGGGCTGCTGTCTGTGGGGTCACACAGAGTCAGACACGACTGAAGCGACTTAGCAGTAGCAGTAGCAGCAAGCTAACATGGCAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAGGTTGGCTTAAAGCTCAACATTCAGAGAACGAAGATCATGGCATCTGGTCCCATCACATCATGGGAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGCAATTAAAAGATGCTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGAGAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAAAGGAGATCAGCCCTGGGTGTTCTTTGGAAGGAATGATGCTGAAGCTGAAACTCCAAGACTTTGGCCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAAAGATTGGGGGCAGGAGGAGAAGGGGACAGCAGAGGATGAGATGGTTGGATGGCATCACCGACTTGATGGACATGAGTCTGAGCAAGCTTTGGGAGTTGGTGATGGACAGGGAGTCCTGGTGTGCTGCGATTCATGGGGTCACAAAGAGTCGAACACAACTGAGCGACTGAACTGAACTGAAGCTAACATTTAGTTTTAGTCTGAATTACAAATCATACATAAAGTAACTAGAAGTAAGAAGCTCTGGCAAGGTATTTTCCAGAAGAATTATTATTTAATAAAAACCACTCAGTGTGTAAATAACATTTTATATATTGATTTAAAATATTTAGTTATTTATAAAGTGCCTGATAACTTTTAAGTAGTTGTTTTGGCAGGTTTTTTTTTTTTGCTCAACTTTCTGTTGAGTAGACTGTTACTTTGCAGTAAGGAAACTGTATTGTAGATTTTGATTTGGTGAATATGATTAATGAGGGTTTCCTATGTTTTTTACTTTATAAATGTTGGATTTTATGCTGCAGTTGAATGGTCTTGTGTCTCAGTCTAAGTGGATGCGCCTTAAAAGCCTAAATTATGGGATCACACATATAAAACAAAGCACAATTGAGGCTAGTTTTTTAAACAGAAATATGTTGATTATGCGATTGCCACTGAGCTATTAGGTACAAATTCCAGATAGTTTTTGTTTAACCTATAATTTTTATTTTTTCATTTTCAAGTTTATTCATAGTGTTGTTTTATAAAACTTAAAGGGTTTTCTCAAAATTAATAAAAGCTCATTTCTGATTTTTAATCCATGTGCTCCCTTCTCTTCTGCTGAATTCATTTTGACTGATCCATTCAAACATTGTACATCTCTATATTTTGTTATATATACTTGCTAGCTTAATATTCTAGGAGAAGCAGAAGATAATGAAGTTGAAGGCAACTCCCTTGCATACATTTATTAATGTTCTTTATTTTCAGTTATTTGATTTTTCTATGGCAACCCACTCGAGTATTCTTGCCTGGAGGATCCCAGGGACTGGGAGCCTGGTGGGGTGCCGTCTATGGGGTCGCAGAGTCGGATACGACTGACGCAACTTAGCAGCACTAACCTAATTTAGCCAATAAAACGTTACTACAGGAGATCTTTACTTTTCCTTCCAGGAAGGAAGAGTGTATATCTACCAGTGGCCTACCACCGTATTTTGCATGTAACACACTTTGGGTATATTGACTGTATACCTGCTTCAAGGACCTTTACTGACCATAGCTGGTGCTCATGTTTATGTTTGTTTATGTTACGTTTATCTCAGAATTCATGATTAAAATTCATTGCTTTGTTGATAATGAATTTTGAAGACCTTTGAAGCTTTTTTAAACCGTAAATTTAGCAGAAAAGTTCTAATCAAACATTTAAAACCTCTTTTTTTTTTCTTTTAG
Seq C2 exon
TTCTATAAACATGTGGTACAGAGTGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917:ENSBTAT00000045257:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]