RnoINT0131087 @ rn6
Intron Retention
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44045275-44046044:+
Coord C1 exon
chr1:44045275-44045358
Coord A exon
chr1:44045359-44045999
Coord C2 exon
chr1:44046000-44046044
Length
641 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTTTCTCTTTTTCTACAGTTC
3' ss Score
10.77
Exon sequences
Seq C1 exon
TTGTATTCGCTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAGATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq A exon
GTGAGTAACAAGTTTTACCTTTGTGTCTTCAAAAGAAAATAACCCTTATATTTGTGTGTGGGTGGGGGGGTGGGGAGGAAATACATGTGCCATGCACAAAGGATCTGATAGGCCTGGTGTGCATAAGCTTATTCTCTTGAAGTTTACACTATTTCCAATGATCTGATTCTTTGGATAATGGTTCTAAGAATATGCAAACATGTATGTTAATACCAGCAGTACTAGTCTGAAAAATTAGTAATTGGTATATTTCATGAAAAACTTCAAAGTATGCTTTCTTAAAGACTTCTTTGCTTTTGTTTTTTTGACAAGGTTTCACTGTAGCTGAGATTGGCCCCAGCTTGTCATCACTCAGTCTCAGCCTCACTGAGACTGGAATTACAGGCATATTCTGCCCTGACCAGCTAGAATGGTTTTACACAGCACACTTTAGATGCATTCACTGTGCGTAAGTTTTAGAGGATTGCTTAAAAAATTCAGTGTGATAGCTAGTTTCCTGTAAGGTGAATGATGTGAAACCCAAAAGTTTGACTAAAATTTATTATTTTAATTGACCTTTAGAGTTCTTAAGCCTGTGGTTATCAGAAAAATTTAATCTAGCAAACTGATTTTAGAATCGTTTTCTTTCTCTTTTTCTACAG
Seq C2 exon
TTCTATAAACATGTGGTACAGAGCGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919:ENSRNOT00000065733:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]