MmuINT0132607 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:3145075-3148580:+
Coord C1 exon
chr17:3145075-3145158
Coord A exon
chr17:3145159-3148535
Coord C2 exon
chr17:3148536-3148580
Length
3377 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCTTTTTCTTTTTCTACAGTTT
3' ss Score
10.47
Exon sequences
Seq C1 exon
TTGTATTCACTGAATGACTATAAGCCACCCATTTCTAAAGCAAAAATGACCCAAATTACAAAGGCAGCCATCAAAGCTATTAAG
Seq A exon
GTGAGTAACAAATTTTACTTTTTACTTTTGTGTCTTTTTAAAAGAAAATAACCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGAGAGAAAGAGAGAAAGAATGAGAATATGTGCATGTGCCATGCATAAAGAGTCCTGTAGATATATCAGGCATCTTCCTGCATTGTGTCCCCCCTCCCCCCTTTTTTGAGATAGTCTGTGGGTATTAAATTGTCAGTTTGGGAGATGGGCTTGGGGTGTGCCTGTGGGGAATTACCTTGATTACCTCATTGAGGTGGGAAAGCTTGTCCACTCTGGATGGTGGACCTGCACTCTACCTAGTATCCTGGCCTGCATACACAGAGCTTGGAGTAGAGTAGCAGCAGGCATCCACCATTTGTTGTTGCTGCTGCTACTTTAAATTCTAACTTGTATGTAGGGTGTGCTTTTAAATGCCTGGCAATTAGAGGGCAGCTATCCCTCCTTTCACCACAGGATGTGAAGCTTGAACTCATGCCCTTGAGTTTATCTGGGAAGTACTTTTAACCACTGAGCCATGTCCCTGTTTCTCTCTGCTTTGACTGTGGATGTGTGTGACCAAGCGTCTCAGGCTTCTGCTTCTACAACTTCTCCAACATGACAGACTGACCTGGAACTGTATTGAGTTGGCTTTCATTAGGATGTCGTCACAGCAGCAGGAAAATAAACTATATAGTTAGACTGGCACATACCTGGTTCACACATGTACATGTAGGGAAAACACTCATACACAGAAAATTAAGTAAGTAAGCCTAAAAAAAAAAACCTTTAAAAAAGCCAAAAAGAAAACAATCTTTTATAATTTTTGAAACAAGCATTTTCCTTACCATACAGGTATGTGTTTGGATATATAACTACATCATAGAGTAAAGGGGTTCCAATACTGGCGTGTGTCACTACACTGACTGCAAAATTTTAAATATAACTATGTAAAAGACTTGGAAATAAAATTGGTATATTGTTTTTTTCTCTTATTGGTTGTATATAGATCTGAAAACAAATCATGAAAAATAGTTGGGCTTCCTAGTGAATAAAGCACTTGAATTTTAGGAAGAGACCATGGGAAGTTATGCATTGCTCTGATGCAGTGAGTTTTGAGCCTGTTAACTCATCCATACCTGGAACCACAAGGAAAGGTTGGACTCTCTGAGATGAACACATGATTTGTTTTAAAAAAATCTCTCAAGTTTAGTCATATAATTTCTTGTCTCCTGATCTAAGACTTCCTTCCAGCAATGATCTTAAAACTGAATGATTGCTTCTAATTAAGTAAGTATTAACATGAACATATAGTGATTAAAACATTAGCTCTAACTAGACCCAGAAGCTAATAAATTATCTTTTGAAATATAGTAACATATTAGCATTCCTAATTATTAGTATCTGCTACCAGAAGAAATTCACTTGAATCTTTGTAAAGTTTAAAAAATTAAGTTTGTGTGTGTGTGTATGTGCATGTGCAGGCCCGTGTGCCCTGCACAGCACCTGCTTAGAGATCGGAGGAAAAACTTGCAGGTATTCTTTTCTTTTGTGTGGGTCCTAGGGACCAAACTTAAGTCAGTGAGGCTTGTGTGACAAGCACATTTACTTGATGAGCCATCTTGCCAGTCTTTGCTTGTGTGTGAATTTGTGTGAGTATGTATGTAAACCCCCATATTTTTATGTAAAAGAAAAAAAAGACAAAAACAAGAAAAAAATCAAAGATGAGTTATAAAGATGGTGACAAGCACATTTAAGCCCAAAAATTCTGAAAGAAGTTAGTTAGTTTGTCTGTTTTAAGTGCATCTGATAGGATAGGCCTGGTGTGCACAAGCTTTCTTTTATACATATTCTCTTGTAGTTTATACCATCTCCAGTGATCTGATTATTTGGATCATGGTCCTAAGAATATGCAAACATGTATGTTAATACCAGCAGTACTAGTCTGAAAAATTAGTAATTGGTATAATTCATGAAAAACTGTTCAGCAGAGTACTTGTTAAATTAAAAAGATTCAATGAAGTGTAGGTTCTAGCATTATTTTCAGATGTCAGAAGAAAATAGTAGTCATGAATAGTGTGTAGAGTTTGAATTGGGGTTTTTGTCAATTGAGAGTAACTCAATTTCTACAGTGTACTGTATTGTTAGGTATATTATTACCACCTTTAATAAATCTAGTTTCGGAAAAGTTGTAGATTCTGATAAGCACTGTTTTACCCCTTGGCTACATCAGTCAGTAATTATTTGTTCTTTATTTCTACTCCCATATCACCTGTCAGCCTTTTGTCTAAGATCCAGGGCATTCACATTCACGCACACATGCATGCAACCCCAAGACTTCAGATGTCATTAATGGTAACAGTCCCTAATACTTGCATTTAAATCTCATAAAAATGTAGACTTTTCTTAGAAAGCACCCCAAACCATAGTATGTTGAGATCATCTGTAGGAATTTTATTTGGATAAAGTACTTTTATGCTTATATGCTACAGTTATCCCATGTATACATTCCAGTGTTATAGCTTTAGTTCTTAATGTTTCTTCAGTCTAAGGACAGGGGTTATCCTTTGTAAAGCAGAAGTCATGAGACTGGAAATATAATTCAGGTTCTTCAAAAGAGAAATGTTCTAATCATGGCATTACCATTTACATACTAAAATTTTGTTGTTCATAATTTCTATCCTATTTACTTTCAGGTTTATGTTGAACTAAGTGTTTTCATAATTGAAAGCAGCTCATTTAATTTTGTATGTATTGTTAGCACGTTGTACATAAATTCTTCCTCTGTTTCCAGTTGAAACAGACTCTCACATTTATTAATGGTTAGAGTTACTTGCTTTTTCTAGTATTGTCCTTAATTTAGGTATTAAAATGACACTGTAGAATGTGGGTAGAATGTGGGTACTTTTTCCTTCTCTGGAAAGAGCATGCTTGTCAGTGTGCAGTACTTTGCTGTCAGTACAACTTGTCAAAGTGTGCTTTCATAAAGATTCCTTTGTTTTTGTTTTTTGACAAGGTTTCACCGTATAGCTGAGATTTGCCCCAGCTTGTTATCACTTAGTTTCAGCCTCCCTGATGCTGGGATTATAGGCATGTACTACCCTGACCAGGTAGAATGGTTCTTTGTAACACACTTTCGATACATTCACTGTGCATAAATGCTTCAGAGGATTACTTTAAAAATTCAGTGTAATAGCTAGTTTCCTGTAATGGTGAATTATGTGAATCCCAAAAGTTTGACTGAAATTTATTATTTTAATGGATCTTTGGTGTTCTTCTTAAGCTTGTGGTTATCAGAAAACTTTAGTCTAGCAAACTGATTTTAGAATCATGTTTTCTTTTTCTTTTTCTACAG
Seq C2 exon
TTTTATAAACATGTGGTACAAAGTGTTGAGAAATTCATTCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
-Rbm16:NM_134123:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: