DreINT0136710 @ danRer10
Intron Retention
Gene
ENSDARG00000095981 | si:ch211-161n3.5
Description
si:ch211-161n3.5 [Source:ZFIN;Acc:ZDB-GENE-110913-81]
Coordinates
chr4:10931327-10932043:-
Coord C1 exon
chr4:10931729-10932043
Coord A exon
chr4:10931651-10931728
Coord C2 exon
chr4:10931327-10931650
Length
78 bp
Sequences
Splice sites
5' ss Seq
CTAGTGCGG
5' ss Score
-0.3
3' ss Seq
TGCCACATGTTTTTCTTCAGACT
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTTACACTGATCTCCGACTGGTAAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATCTCAGAAAATGGGGCACAGTATGTGATGCATGCTGGGATATGAGAGCTGCCAATGTCCTCTGTAAACAGCTGAATTGTGGGATTCCTGTGTCCGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCAGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTCATCTGCTCTA
Seq A exon
GTGCGGACATTTTATTAGAATACATTAATAAATTACTTGTATTAATATCTTAATAAACTGCCACATGTTTTTCTTCAG
Seq C2 exon
ACTCGTCTTTGCCTCTTCATGAGGGTTTGGTGCGGTTGTCTGGAGAGAGTCAGTGTGAGGGGCAGGTGGAAGTTTTGATCCAGCAGGTCTGGAGGAAGGTTTTGCTGGACTCCTGGAGTCTCACTGAATCCTCTGTGGTCTGCAGACAGCTGGGCTGTGGCTCTGTGCTCAACTTCTCGGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGAGTGTGTGATGGGCTTCCAGTGCTCTGGGAGTGAAGCTCATCTGGGGAACTGCAGCTCTCCACAAACTCTCAACTGCAGCTCCACACAACAGCTGTCAATCACCTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095981:ENSDART00000150247:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
PF0053013=SRCR=WD(100=88.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTGGAGAGGGAAGTGGT
R:
CGCACCAAACCCTCATGAAGA
Band lengths:
176-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]