DreINT0139553 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14742333-14742768:-
Coord C1 exon
chr17:14742636-14742768
Coord A exon
chr17:14742543-14742635
Coord C2 exon
chr17:14742333-14742542
Length
93 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TGATTTATTGTCATGTTTAGACC
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTGCCCGTACCCATGGTTATTCCAGGACCTCAAGATGCTCCTGAACAGAAAGACACTAAATGCAGCCTGCCTGCACAGAGCTCGGTAGAAGATGATGAGCCGGAGAAGGGAAAAGACAAACCTGCGTCCCATG
Seq A exon
GTAAATAAAGAATTTAGTATCACTCGTCCATTTGCTTCTCCAAGCTTCTCTATGCAAGTGTTAAATTAATTTGTGATTTATTGTCATGTTTAG
Seq C2 exon
ACCAGGGCAGCACTTACAGTGGAGATCTGGAGTCAGAGGCCCAATCGACACCATTAAGCTGGGCAGAAACTGAGGATGCAGGAGCCAGCGTGAAGCCAGCGGTGCCAGCAACTGAAGCAGAGGAGCCGTCAGCTGAAGCTGAGGACCATACGCCTCCAACCACCAATTTGACAAAGGAACAGCCTGATCTGGAAAATGATTTTCCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTAAATGCAGCCTGCCT
R:
GGCTCCTGCATCCTCAGTTTC
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]