MmuINT0180522 @ mm9
Intron Retention
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126567240-126568312:-
Coord C1 exon
chr4:126568259-126568312
Coord A exon
chr4:126567420-126568258
Coord C2 exon
chr4:126567240-126567419
Length
839 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTTGGTTTCTTCACTTTCAGACC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AATCTCAAACTTCTGAACAAGAACTGTTTCTAGACACCAAGATATTTGAAAAAG
Seq A exon
GTTTGTAGTTATTAATATATTTTAGTTTTTAGAAATACTATTCTCTGCTAACAATAGGAACTCAGAAGACTATCCTTGGGCTTAGTAGTTTATAATTTTACCTAGTTTGTGAGGGACATGAATTGACTGTCATGCCAATTTGTAATGCAAATAATAAATATCTCAAATATTTTAATATTTGAGATAATGCATTGTAGTGTTTACTAAGAATATGAATCTAATTCTGTGAAGCCGTTAAAGAAGTTACTTGATTCTTTGTTTCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCAATGTGTGTGTGCTTGCGTGTGTGTGCGTGTGTGTGTGCGTGCGTGTGTGTGTTACTTCCTCACAGAAGCATCTGGGTCAGAAAACTGCACAGGTAAATGTAGTTTATACATGTATGTGATCAATATATATTAAGGTTAGAAGGCATCTTTGGGTATCTTTCCTCAGGCACCATCTGCTTGAAAAAAACAAAAAGACTTTTTTTTTTCACTGGCCTGGAATTAGCCAAGTAGCCAAGTAGGCTAGTCTGGCTGTCCAGCAAGCTTCAGGAACTCACCTGTTTTAGGTGCTGGGATTACATCCTGACATCATGCCTCTCTGTTTTTCTTTTTAGAAGTAGGTTGTGGGGCTCAGTCTCAGGTCCTCTTGCTTACATAGGAAATACTCTACTGATGAAGTTCTCTCTCCAACCATAGTTACTTTACTAGTTGTGTCCTAATAATTATCTTTTAACCATATTTTGGTTTTTAGGATGTAGGAGTTCAGGAGAGTTTCTAAATATGTCAGGAGAGCATGTTTGGTTTCTTCACTTTCAG
Seq C2 exon
ACCAAGGAAGTACATATAGTGGTGATCTTGAGTCAGAAGCAGTATCAACTCCACACAGCTGGGAAGAAGAGCTGAATCATTACGCATTAAAGTCGAATGCTGTGCAAGATGCTGATTCAGAACTGAAACCGTTTTCAAAAGGGGAAACAGAGCAGGATCTGGAGGCAGACTTCCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-Zmym4:NM_001114399:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.896
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAAACTTCTGAACAAGAACTGT
R:
GATGGGAAGTCTGCCTCCAGA
Band lengths:
230-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: