HsaINT0186035 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35864014-35864644:+
Coord C1 exon
chr1:35864014-35864067
Coord A exon
chr1:35864068-35864464
Coord C2 exon
chr1:35864465-35864644
Length
397 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
3' ss Seq
TTGTTATCTATATATTTCAGACC
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGTCCCAAACTTCTGAACACGAACTCTTTCTAGACACCAAGATATTTGAAAAAG
Seq A exon
GTTTGTAGTTGAAAATATGTTTTGATTTTTAGAAATACTACCCTCTGTTAGAAACCTATAAAATATTAGTACCCTTGGATTTCATATTTGTAATTTTAACTATTTGTAAGGGGTATCAGATGTATATGAAGTGTACTAATTTGTAGTGAGAATAATAAAAGCCACTCAAATGTTTGTTTTAAAAATTAATTGAGATAATGCTTTCAATTGCCTACCAAAAATATGAATCCAGTTCTTTGAGACTGATGAACAAGTTACCTCATTCTTGAGTGTACCTAGGTAATTGTCCATCAACCGTATCTCATTTTTTGGTATTTAGGGGTTCAGGAAGTTTTCCGAGCATGTCAAGATGAGGCTATTTTATTTTGAGGGCTTAATTGTTATCTATATATTTCAG
Seq C2 exon
ACCAAGGAAGTACATACAGTGGTGATCTTGAATCAGAGGCAGTATCTACTCCACATAGCTGGGAGGAAGAGCTGAATCACTATGCCTTAAAGTCAAATGCTGTGCAAGAGGCTGATTCAGAATTGAAGCAGTTCTCAAAAGGGGAAACTGAACAGGACCTGGAAGCAGATTTTCCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCAAACTTCTGAACACGA
R:
TGGAAAATCTGCTTCCAGGTCC
Band lengths:
230-627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)