GgaINT0137496 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4676589-4676939:-
Coord C1 exon
chr23:4676886-4676939
Coord A exon
chr23:4676769-4676885
Coord C2 exon
chr23:4676589-4676768
Length
117 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TCTGATCGCTCTCGTTACAGACC
3' ss Score
9.34
Exon sequences
Seq C1 exon
GCTCTCAAACATCCGAGCATGAGCTCTTCCTGGACCCCAAGATGTTTGAGAAAG
Seq A exon
GTCAGTTTGACTTTTTTTTGCAAATGGACTTTGATCCAGATATATCTTTTCTTCAAACTCTTCTCTTTGTCTGTCCTTTCCTATAGCATGTGGTATATCTGATCGCTCTCGTTACAG
Seq C2 exon
ACCAAGGTAGCACTTACAGTGGAGATCTAGAATCAGAAGCAGTGTCCACTCCACACAGCTGGGAAGAAGAGTTAAATCACTATGCCTTACGATCAAATGCCCTGCCAGAACCAGATCCAGAACCGAAGCAGATCTCCAAAGGTGAAGTGGAACAGGACCTGGAAGCAGATTTTCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.967
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCAAACATCCGAGCATGA
R:
CTGACGGAAAATCTGCTTCCAG
Band lengths:
234-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]