DreINT0181035 @ danRer10
Intron Retention
Gene
ENSDARG00000035823 | zmym4
Description
zinc finger, MYM-type 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5459]
Coordinates
chr19:40512206-40514924:+
Coord C1 exon
chr19:40512206-40512377
Coord A exon
chr19:40512378-40514711
Coord C2 exon
chr19:40514712-40514924
Length
2334 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
TTATTATTATTTTTACTCAGATC
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTTCCAGTGCCCTTGTTCTTCCCCACGACACTGGACAGTGCAGAGAGCATTGTACAGACCATTCAGGAAATCAAAGAGAAGATCCCTGATGATCCTCTGGAGGCCGACCTCATTATGATGGCGGAGATGGTGGCGGAGGATGCAGAGAAGGAGAAACGCATCAGCTCCACTG
Seq A exon
GTAAATGATCAACATTTAAAGGGCTTTTTTTTATATCTGCAACTATTTTATGATTGTTTTGAACAACTTCAAATGGAAACAGTTTGTTCCTCCATCATCATGACATGTGGATCAGAGAAATCTTTAGCTGCATGAAACTTGGAAGTTAAGAGAATCTCTCAAATCTTTTTACAAGCTCTAGTAACCCATTTTAGACTTTATTAAAGGCTTACCCGGTTCTGTTAATATCTGCTCTAATACATGGTCAACTACTGGAAATAGGGAAAATTGACTCTGGACGGCTCTATTAAACGGTTTCTTTTTACTCTTATTTACTAATGTTTTGTAACATAGCTTAATGTTTTTATTTTGATTTGTTTTCTATTTCAGGGGATATATTTGTTTTGAATTCTTTTTATTTTGAGCAGATAGTGGCAAAATTGGGTGGCATGGTGGCTCAGTGGTTAGCACAATCGCCCTACAGCAAGAAGGTTGCTAGTTCAAGTTGGCCTTTCTGTGTGAAGTTTGCATGTTCTCCCCCGTGTTCGTGTTGGTTTCCTCAGTGTGCTCCGTTTTTCCCCCACAGTTCAAAGACATGTGCTATAGGTGAATTGAAAGATTGAAATTTATGCTCAATTTCGATTATCGAATCAAAAAATAGAATCGTCGATGCTGCCACGCCCCCATGTCACATCAGCTTGGCTTGCCAAGCGGGAAAAAAAACAGGCTTGTTGAAGTGCTTGTTAAACTGCAGAAGCAGGAGACCAGCAGAACTTAAACCCTCTCCTCTTTCAATGAAGTCGCCGGTGTGTAAGCATTTTGGATTTCCAGTGAGTTATGTTGACAACGTTCGTGTTGTCGACAAAAAAACAGTTTTGCAAGCTCTGCTATGCACGTATTACGTACGGTTCATCCGATAGACAACACCGGCATCGCGATCCTCCGCTCGCCCCCGTTGCAAATCCGCTCGCAAAAAGTACACACTCAGGCCCTGTTTACACTGTCTTTGTTTTTAAATGGCATTTTAGAACGACAACGATTTGACATCCACAGTGGGGTGTAGCATTCCTGAGCAGCCCTCCTTCCTCTCTACCTCTGAAAATGCACATCACGTGACCACACACACACAGCCATGCGCTCGAGACAGCAGGTCCAGGCAGTCAGAGGACTTCTTCAATCTTTCACTCACTTGTACTTTGTCATTATAGCGAACACCTCAGATACTGTTGGCTGGTTCCTGTTGGTTGTGCGTCTTTTTTACCGACGCTATTATAACGACACAGATCACTGCCTATTCACGAGTCCCGCAGAAAAGGTGATTGACAGGTGGTAATTATGTGTGTATCTTGCCTTTATTCATTTACTGAATGATTTGTTTATGGGTAAAACAAAGACCATGCAGGTCAGGTAGTTTAAACGGTAGGCTACAAATAATTAATTGGTCATTAATTAATTATTCATAATCGAAAATTGAATCGAATCGTGCCTTTAGAATCGAAAATGTAATCGAATCGAGGATTTGGAGGATCGTGACACCTTTAGAATTGAATAAGCTAAATTGTCCTGAATAGTGTCTGAATGAGTGTGTATGGGTGTTTCTCAGTACCGAGTTGAGGCCGGAAGAGCATCCGCTGCATAAAACATATGCCGGAATAGTTGGCGGTTCATTCTGCTGTGGAGACCTCTGATAAATCAGAGACTAAGCCATAGGAAAATGAATAAATGAATGACTGGCAAAATAAGACAGTCTGTAATTTCTCTTATACTGTATTATATACTATCATGTATGGTCTTGTTGAAAACTATTGAACAACACCCATTCTTGTCATTGGACAGTTTTGAAAAATGTTGGATCCACTTCAAATGTTATATTTTTAAAGAATCTCTCTTTGCATGACAAGTTGACATTACAGTTGTATGTACTGTATCTTAAGCATTGTATAAATTGAAATGAAGTACAAATATTTTAATGCAAACTTTTGTAAAATGTCAACTTTTCCTGTTGTTCCATGCATACATCCATTCAAATCAATTCATCTTTTTTTCGATAGCACTTTTACAATGATCGTGTCAAAGCAGCTTCACATAGAAGTTCTAGTAAACTGAAACTGTGTCAGTCCAGTTTTCAGAGTTGACTTTAGTTTAGTTCAGTTCAGTGTGATTTAATTTTCATTGCTGAAAGTCCAAACACTGAAGAGCAAATCAATCGATGCACCACCACAAGTCCCAAACCAAGCAAGCCAGTAGAGAGGAACAAACTTCAGTAATTGACGAAAGTGAAGGCAAAAACCTCAAGAAAAACCAGGCTCATTTCTATTTTGTTCATAAGCATTTTTTATTATTATTTTTACTCAG
Seq C2 exon
ATCAGCCTGTACACATAATGGAGGACCTTGATCTGGAAGCCCTGTCCAGTAATCTGAGCTGGGAGGAAGACTCTGTGTCTTCTGCTCAGACATGGGATCAAGCTCCAGAGCCGGAGCGTTTTCTTCCTCCTCCGTCCAGATCTGCCACAGTTACTCCCGTCTCCAGCACAGCAGAGGAGCCACAGATGGACCTGGAGGCAGATTTCCCAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035823:ENSDART00000140926:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]