DreINT0139557 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14729085-14731317:-
Coord C1 exon
chr17:14731169-14731317
Coord A exon
chr17:14729200-14731168
Coord C2 exon
chr17:14729085-14729199
Length
1969 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TATCTTCACTCAATTTGTAGTGC
3' ss Score
6.98
Exon sequences
Seq C1 exon
AGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
Seq A exon
GTTTGACCTATTATGTCCCATTTTACAACATTAAAAATTTGTCTCTGATGTCGCTAGTGTCTATGTGAAGTGTCAGCTCAAAATACTACACAGATAGTGTTTTATAACTCTATAACTCCCTTTTAGGCTTTGATCCTAATTTTGGTGGCTGTGGCTTTAAATTTAAATGAGATTTTACTTATTTTTAAAGAGGGGTTGAGCTACAAACGCCTATGTGTCAGCATAGTGGCAGATTTAAAAACAAGACTATGCTAATGAGGGAAAGATCGTCACCAAAGGGCGAGGCTTTCGCCCTCTTATGACACATACAAAAGAAGAATGTCAGTCAAACTGTTTCTGCAGTCTGTTTTTATGATTATAAACAATTCAATTACTACATTTTTACCGTTAGAAGCTGGCTATATTCACAGACTGTTGCCACACAACTGTTTTAAACACTTGGATTCTCTTTAAAGGGCACCTATTTTACCCCTTTTACAAGATGTAAGATAAGCCTTTGGTGTCTTCAGTATGTGTCTGTAAAGTTTCAGCTCAAAATACCCATCAGATAATTTATTATAGCTCTAGAATCTGCCCAATTTAGTGTCTGAGTACAGTGTAGGTGTTTTTATAGCCTGTGGCTTTAAATGCGAATGAGCTGCTTCTCCCCGCCCACCTTTTCCACGTGTGTCTGCTACTAATCATGCCTTACATTAGATAAACAGCAGTTAGTGATAGAGAGACTCTGATGAAGCTAAAATACAACTCATTAGTTAAAAATAGCAAGTAAGTTTATTTAATGTATTTGTGGTGGAGTTTATTCAAGCCTTTCTGAAATGATGAGTCTCACACAAATGCCGTTTGCTGTACACACACGCACACACGCATATTAGTGTTTACTGACACCATGCGGTCGTGGTGATTATAGCGGTTAAGAACTACATAGTAATTTTACTGTCTATTACAAACATCCTCTGTTTTAAAAATGTTTTAAACTTCTAAAAATCACAGAGAGTTGTAACAAATATTTTAATCCGAGTTTCTTTGCAAAAAAATGTTTTGTGGACATGTGTAAACATGTTACTTTAGAAAAATACACCTACGTCACGTTGTGGTGGGCCTCAAAATCACTGGGATTTGGGTCCTATTATAACGTCAGGAAATTTAAAAAAAGACACTTGTTGGGTTTTTATCACTCCAATATGACAGTGGACACACTATACCTACAGACTGTTCTGTCCAAACAGCCTGCAAAAGTTGATTTTCATCATAGCTGACCTTTAAAACATTACAGGACTGCTTTATAAAGTAAACTTCTTTAGGGCTTTTCACACTTGACATTTTTATCCCTGGGTCATCCTAAAACCAGGATAAATGGAAATTCTGGCTTATCTGTTCTCATGTTTCGCACTGCTCATACCATATACCTGTGGACTGGCTTTTCAAAACCAGAACAATTTTATTTAATTGTATTAAATGTGTCCAATTAATTAACAAATGACAATAATCACAAAAAAAGCACAATCATATTTTTGTCCTTTGTAAATGAACTGGATCATTTTAGTTTGTTATTGGTAGATGTTTTGTAAGTGTCAGGCTGCTCGGCCTTGAACATGAACATAGCAGTGAACAGCATTGAGGAGTTTTCACTGAAGATTTAAATGAACAGACAAAAAGATTACTAAAAACACTTTATACTATATAAATGTACACTATAACATTGATGAGATTACACTGAAGAATCTAAATTTTTAAATGTACATTAATTAAAAAAACTATATAAAAACACATTTCCATAAAAATAACACTATATTCCATTAAAAATAAGAACCTAATATATTTCATGGCCATTTCATGCAGATGTTTACAATTGTATAGACACCCGTCTTTAAAAGTTTGTCTTGTTATTATTGCATTAAATTATTATTACAGATTAGATAAGATTAGATTGTGCATTAAGTCATATATTTTATCTTCACTCAATTTGTAG
Seq C2 exon
TGCCTGCTTGAAAACGAGCGTCTTGAGAACATCTTCACAGACCCACTGTATAATCAGTTCATCACCGACATCACCACACTGCTCAAGGACTGGGTCAACAAAGTGTCACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGACCATGAAGGAGGA
R:
TCCAGGTGACACTTTGTTGACC
Band lengths:
262-2231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]