HsaINT0186040 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35873609-35879684:+
Coord C1 exon
chr1:35873609-35873760
Coord A exon
chr1:35873761-35879572
Coord C2 exon
chr1:35879573-35879684
Length
5812 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TTCTTTTTTTTTTCTTGTAGTAC
3' ss Score
8.78
Exon sequences
Seq C1 exon
TCCGCTCTATCAAGCTGAAGGAAGACATTCTGTCCTGCACTTTTGCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAATATGATCCAGACAGTATCTTATACTTGTGCCTTGGAATTCAACAG
Seq A exon
GTATCAAGTTAAACATATGGATTCTTCAACCTAGCAAATCCATTGACCAGAATATGTCCCCACAGAAATTACATGCACATGTACACACCCAGATATATACTGGTATTTTCATTGGAACATTGTTTTTAACAACAAATTGGAAACCGCTCAAGTGTTAATCAAGCTTTGTGGATCAGTCAACTATAATATGTCCATACTGTGGAATACTGTAAAATATTTACAAAGGAATGGCTTGCTTCTGTATTTATTGACCTAGGAAATTCTTAGAGGCATATATTTTAAAAAGTAACCTGCAGGGCCAGGTGTGGTGGCTCACACCTGTATTCCTAGCACTTTGGGAGGCTGAGATGGGAGTATCACTTGAGGCCAGTGATGCAAGACCAGCCTGGGCAACATAGGGAGACACTATCTCTACAAAAAATAAAAAATTAGCCAGGTATGGTGGTGTATGCCTCCACTCCCAGCTACTCAGGAGACGGAGGCAGGAGGATCACCTCAGCCCAGGAGTTTAAGGCTGCAGTAAGCCATTGGAGCTCCAGCCTAGGTGGCAGAGTGAGAACCTGTCTGAGGAAAAACAAAAAAAAAGTAACTTGCAGAATTATATATATAGTGTGATTGTTATGGGAAAATATGCATAACATAAAATTTACCATTTTAAAGTTTGCAATTCAGTAGGACTAATAAGTACATTCTTAATGTGCAGTCATCACCACTGTCTATTCTGTAGCTTTATGACTCCAAAGGGAAACCTCAAACCCAGTTAGTAGTCACTCCCCATTACTCCCTCCACCCATCCCTGGCAACCATAAATCTGCTTTCTGTCTCTCTGGACTTGCCTATTCTGGATATTTTGTATCAGTGGATTCACACACTATGTGGCCTTTTGTGTCTGGTTTCTTTCCCTTAGCATTATGTTTTCAAGGTTTATCCATGTTTTAGCATGAATCAATATAGCATTCCTTTTTATGGCTGAATAATATTCTATCATATGGATATACCACATGTTGTTTATCCATTCATCCACTGATGGACATTTGAGGTTCTGCCTTTTGGTGATTGTGAATACGCTGCTGTGAACATTCATGTACAGGTTTTTGTTTGAACACCTATTTTCAATTCTTTTGCCATATATGCTTAGGAGTGGAATTGCTGAGTCTTGTAACTATGACTGAGTTGTTGAGGAACTACTGAACTGTTTTCCAAAGTGGCAGCACCATTTTACATTTCCAACAGCAGTGTATGAAGATTCCAGTATCTCCACATTCTTGCTAACATTTGTTAATTTCTGTCTTTTTTTTTTTTAAACAACCATCCTGGTGGGTATGAAATGATATCTCATTGTGTTTTTAATTTGCATTTTCCTAATGACATTGGGAATCTTTTTGTGTACTTTTTGACCATGTGTATACCTTCTTTGGAGAAATGTCTATTTAAGTCCTGTCTTAGTCTGTATTGCCATAGGGGAGTACCTGAGGCTGGGTAATTTATAAAGAAATTCTTGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAGAATACAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAGTCCCAGCTACTCGGAAGGCTAAGGCAGGAGAATCGCTTGAACCCAGGAGGCAGAGTTTGCAGTGAGCCAAGATCGCGCCCCTGCACTTCAGCCTGGGTGACAGAACAAGACTCTGTCTCAAAAAAAAAAAAAAAAATTCTCATGCAGAATCATGGCTTATGGTTCTGCAGTACAAGAAACATGGCTCCAGCATCTGCTTCTGGTGAGCGCTTCAGGAAGCTTCCAATCACGGCATCATATGATCATGGCAGAAGGTGAAGGGGGAGCAGGCGTCTCATGGCAAGAGAGTGAGGACGAAGTACCAGGCTCTTTTTAACAATCAGATCTCTCAGTAACTAATAGAGGGAGAACTTCATTACTAGGAGAATAGCATCAAGCCAGTCATGAGAGATCAGGGCCCCACTGCCAACATTAAGGATCAAATCTCCACGAGGTTTGGAAGGCACAAGTATCTAAACTATATCAAGTCCTTTGCCTAATTTTTAATTGAATTGTCTTTTTGTCATTGTGTTGTAGAAACTATATATATTCTAGATATTAAACTTTTATCAGATATGTGATTTGCAAATATCTTCTCCCATTCTCTGGATTTTCTTTTCACTCTCTTGGTGTAGTGTACTTTGAATGACAAATATATATTTATTTATTTATTTATCTGTTTATTAATTAATTTATTTATTTATTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGACACCATCTGGGCTCACTGCAAGCTGCGCATCCCAGGTTCACGCCATTTTCCTGCGTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCCACCACACCTGGCTCATTTTTTTTTTTTTTTCCAGTAGAGACGGGGTTTCACAGTATTAGCCAGGATGGTTTGGATCTCCCACCTCGTGATCCGCCCACCTCGGCCTCCCAATGTGCTGGCTTTACTGGCATGAGCCACTGTGCCCGGCCAAATTTTTTTTATTTTAATGAAGTTCAGTTTCTTTTTTGTTCTTCCTTTTCTTTTCCTTTCTCTTTTCTTTTTATTGCCTGTGCTCCTGGTGTTATATCTAGGAATCTACTGCCACATTCAAGGGCATGAAGATTTAATCCTCTTTTCTTCAGAGAGTTTTATGATTTTAGCTCTTATATTTAGGTCGTTCATTTATTTTGAGTTAATTTTTGTATCTGGTATGAGCTAGGTCTACCTTCATTCTTTTGTATGTGGTTATCCAGTTCTCTCAGCACCATTTGTTGAAGAGACTGTTCTTTACCCATTGTATGGGCTTGATACCATTGTAGAAAATCTTTTGACCAAATATAGATGGGTTTAATTTGGACTCTCAGTTATAATCCATTTTTCTTTTTTCTTTTTTTTTTTTTTTTGAGATGGAGTCTTGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCACTATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATAGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCATGACCTTGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCCTAATCCATTTTTCTATAGATGGCTATTTTTAGGGCAGTACACAGTTTTGCAACTTACATTATAGCTTTGTATTAAGTTTTGAAATCAGGAAATGTGGTTCCTCAAAATTCTTTGGGCTCTTCAAGGTCCTTTGAAATTCTATGTCAATTTTAGAATGGGTTTTTCCATTTCTGCAGAAAAAGGTCATTGGATTTTGATATGATTGCAGTGAATCTATAAATTGATTTGGAGAATATTGCCATTTTAACATCATTAAATCTTCTGATCTGTGACTACAGGATGTCTTTCTGTTTATTTAGTTGTTCTTTAATTTTTGCTTTCAGCAGTTTTTTGTGGTTTTAAGTGTGTAAGTCTTACAACATTTTGGTTACATTTCTTCTCAAGTATTTTATTCTTTTTGATGCTTTGGTAAACATGGGACTTTTGTTTGTTTGTTTGTTTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCAACGCCATTCTCCTGCCTCAGCCTCCGAAGTAGCTGGGACTACAGGCGCCCGCCACCGCGCCCAGCTAATTTTTTTTTTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGGTCTCGATCTCCTGACCTTGTGATCCGCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCGGGACTTTCTTAATTTCCTGTTTGGATTGTTCATTGCTAGCTTGAAATACAGCTGATTTTTGTGTATTGCTTATATGCTGCAACTTGGCTGGATTCACTTATTAGCTCTAATAATTCATTTTTCTGTGTATTCTCTAAGATTTTCTATATATAGGATTCTGTCACCTGCAACTAGAGATAATTTTACTTCTTCCTTTCCTATTTGAATGCGTTATATTTATTTTTCTTGCCTGGCTGCTCTGCTAGGATTCGCGGTACAGTGTTGACGAAGAATGGCAAGGATAGGCATTCTTGTCTTGTTCCTGGTTAAGGGGGAAGAGACTTTTTTTAAACATGTATGTTGCGTTATATGTACTGATATATTTCTGTAACTGTACAAAACTCACTTCTGCATAATGGAATTTCTTAAAGATTGGAAATATTTTTGCATATGAATAGTAGTTGACTTTGTGTGATGAGTTTGAATGAGTTTGAATAGTCTACTTTTTCTTTATTTTGAACTTTTTCAATAACGAAGATATATTTTTAAGCTTGAAAGTGACTATATTAAAAGAAGAAAAAGAGGAATACTGTTGAACAACAAACTGTAATCTGCCAATAAGTTCATAAATTGCCTTTGAGGAGGCCTCATAAAAATGCCTATTGAAGTGGTAATTTTTGTTAGCCAGAATAAATTTAAATGGAAATAATTTTCTCCAAATCATACATAGAAATGCAAGAAACCAAGATAGCCACAGAAATATAAATTAAAAATACTAAACCTTAAAAACACCAAAATACTTTTATCACGTAATTACATGCTGCCTTGGATTCCGTTACTACTCATGGTGTGTCCCTGTCTCAATTGATTTTATCTGACCTGCGCCGTCAGTACTTTTTAAAAGAGACAGGGTCTTGCTCTGTTACCCAGGCTGAAGTGCAGTGATATGATCATAGCTTGCTGCAGTCTCAAACTCCCAGGTTCAAACAACCCTCCTGCCTCAGACTCCCAAGCAGTTAGGACTACAGGCATGCACCACCACCCCTGGCTATTTGTTTTTAAATTTTTTGTAGAGATGGGTCTCACTGTGTTGCCCAGGTTAGTCTTGCACTATTGACCTCAAGTGATCCTCTCACCTTGGCCTCCCAAAGCACTGGGATTACCATTCCTGGCTCAATACATTTTTAAACTATAGGTATTCTTTTTGTTCTAGCCTATGATATGGTTGTTAATGGTTATAATTAACATAGTTCAATGTCCTATAATTAGACTTGAACTTTTTTGAGGGCTAGGTTGTGGGGCAGAGTTGAGAGCTGTAGTTAGAAGGCTCCAAATAAATAGTTTTTAAATTTGGGTTTCCTCAGGTCAACTGACATTAGCTAACTGTGTGATTGCAAGAAATGATCTTGTATCTAGGGTAAAAAACAAAAGAGCACATCTGCAGATACACATTATGAATCAGGAAAAACATGATTTGGAACGTGTGCATTGGAACCAAGTTTTAGTATGTCAGTTTTAGGAACTAAGTAAAGGGTTCTTCATAATACTTCTTCTGTACCATCCGTGTTTGAAAACGAAGTACAAAAACTTTACCTTGCAAGGTCAGTGCTGAAGATAATGTGTTAATAAGAACAGGAGCTTTAGCTTGAATTCTAGTGTTTTAACAACTATCTCTAAGGTACTGAGAGGTTAAACATGGTTTATAATATTGTAAGGGCAAAAATTAAGGGTAAACTGTATTTCTTACAATAATTTTTTAAGAACTCATGTTTTCTTTTTATCAACATGTATATTTTCTTTTTTTTTTCTTGTAG
Seq C2 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)