GgaINT0137502 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4673091-4674083:-
Coord C1 exon
chr23:4673932-4674083
Coord A exon
chr23:4673203-4673931
Coord C2 exon
chr23:4673091-4673202
Length
729 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCCTTTTTTTTCTCTCGTAGTAC
3' ss Score
9.11
Exon sequences
Seq C1 exon
TTCGTCCTGTGAAACTCAAGGAGGACATTCTCTCGTGCACTTTTGCTGAGCTGAGTTTTGGCCTGTGCCAGTTTATTCAAGAGGTGCGGAGACCGAATGGAGAAAAATATGATCCTGACAGCATCTTATATTTGTGCCTTGGAATTCAGCAG
Seq A exon
GTAAGTCAGAATTTGGACACTGCAGAGAACATACAAACTTCTAGTGGCCTTTTAGGCGTTATACCCATAGTCTCAAGTAGCTACTCGTTTTTTGTAGAGGTGAGAATGTATCTTTCTGTGCTTCGTTCTTAATGTGTCTTAATCTCTTATTCTACTAATTTGTTTTTCGATCAGAGTAAACAAACCTCTTCTTACCTGGGAGGAATGTGGTGTGGAGGGCTTGACACAAATCTTTAGGTTTGGGACTGTATTTACCCCTTTCATATGTAGGAAAGAATTGTAGAAACCTGAGGCTCCTCAGAAGAATTTGATTTATGATTGAACGCTGTACATCTAAAATAGCTGCACAGTACTCTTCCAATATGTGAGTTTAAATGGAAGAGATCACCTGGCAAAGACTACGCTCATTCAGTAGCTCTATTTCAGCAGCCTAATCTGTTGGGCTGCTTTTTCTAGAATATTTTAATACTTAGAGGATGGTGATTTTCTTCAGAAAGGAGCTCTAAAGCTCAGAATAATAAAAATAATTCTGGCCTAGATCTCTCATTTCATACCAAGGAAATCCCAGTCCATGCAGAAAATCTGGTGTGGTATCTTACTGAGGATTTCAGCATAGCATTTTGGACCATAAGACACTCAGACATAGGAAGAGTAAAGAATCTGATGTCCTGTATCTCTGCAATGTTATGTATTCATAAATTATATGTCTTCCTTTTTTTTCTCTCGTAG
Seq C2 exon
TACCTGTTTGAGAATGGTAGAATAGATAACATTTTTACCGAGCCCTATTCCAGGTTTATGATTGAACTTACAAAACTTTTGAAAATCTGGGAACCTACAATTCTTCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGTGAAACTCAAGGAGG
R:
CATTTGGAAGAATTGTAGGTTCCCA
Band lengths:
262-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]