DreINT0148149 @ danRer10
Intron Retention
Gene
ENSDARG00000100953 | si:dkeyp-93a5.2
Description
si:dkeyp-93a5.2 [Source:ZFIN;Acc:ZDB-GENE-131127-18]
Coordinates
chr25:24998461-24999204:+
Coord C1 exon
chr25:24998461-24998647
Coord A exon
chr25:24998648-24998756
Coord C2 exon
chr25:24998757-24999204
Length
109 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TATCTCTTCCTTGTATACAGTAA
3' ss Score
5.8
Exon sequences
Seq C1 exon
TCTCTCTCTCTCCGTCAGTTTGTGGACGTCCAAATCCCAACTTTAACCCTCGTATTGTGGGTGGTGTGAATGCAACTGAGGGCTCGTGGCCATGGATGGTCAGTCTGCGTAAGAGTGGTGTTCATTTTTGTGGTGGCTCCCTCATCAACAATCAATGGGTGCTGACAGCAGCTCACTGCATCAGTGG
Seq A exon
GTAAGGGACATCACAAACAAACTACAAATCTATTGGTCTTGTTTTGGTTGGTTGGAATTTTATTTATGAACCAGTTTTTCTACTCCTGATATCTCTTCCTTGTATACAG
Seq C2 exon
TAAAACCACATCCAGCATGCATGTGTACTTGGGAAAGTGGAGACGTTATGAAACTGACCAAAATGAAATCACCAGAACTGTCATAGACATCATTCCACATCCCTCCTACAATAACAGAACTTCTGATAATGACATCGCTCTGCTGCAGCTGTCAGCTACAGTTCAATATACTGTCTACATTAAACCCATATGTCTAGCAGATCAAAACAGCAACTTCCCTCGTGGGACCAGGAGCTGGGTCACAGGCTGGGGGCGTATTGGCGTTTCGGGCACAGGTGGTATAAGCGGCAGAACCACAGTGTCTGTGCCTTTACCTGCTCCTGGGATTCTGCAAGAGGTTGAGCTTCAAGTGTACAGTAATGAAAAATGCAGTAAACGTTGTCAGGGACCCATCACCCCCAACATGATTTGTGCTGGTACACGAAGTGGAGGCAAAGGAACCTTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100953:ENSDART00000104453:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(18.3=69.8)
A:
NA
C2:
PF0008921=Trypsin=FE(62.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGGTCAGTCTGCGTA
R:
CTGCAGCAGAGCGATGTCATT
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]