DreINT0149877 @ danRer10
Intron Retention
Gene
ENSDARG00000102362 | slc25a12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
Coordinates
chr6:3809102-3811522:-
Coord C1 exon
chr6:3811438-3811522
Coord A exon
chr6:3809187-3811437
Coord C2 exon
chr6:3809102-3809186
Length
2251 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTATTTTCTGTCATTGCAGCAT
3' ss Score
8.27
Exon sequences
Seq C1 exon
ACGATTGAACATGACTGATATCGAGAGGATAGCTCCACTAGAGGAAGGATCCCTGCCATATAATGTAGCTGAGGCGCAGAGACAG
Seq A exon
GTGAGTTTACATGCCTAAGGCCTTGTTTATACTGCCAGTTAAAGGGCCATGACACCCCCCTCTTTCGGTTAAAGTCTACTTCAGAATTTTTTTCAAAAGATGCATGATTAATGCCAGCAGGGGAGAAGGAGAGCGAATAACTGTTGTTGACAGTTAGCTCACAAAATGAGACACAAAGAGGAGATTTAATGTGTGATTTAATGCCCTGCTACATTTGTTATTTGTAATTTCATATACACATAACCACAATTTATATCATTATAAAGATACGTGTGTTCATGTAAACCCTATAAATGAGGACTTCTCCCTCAATCCCGCAATCCAGCAGACTCGGTGCAGCAGGTCTCCTGAACTGTCTATTTTAACCGTTAGCCCTGCTGGTAATCTGGAGGATTTAGGCAAACACAGCAGCACAGTGATGTGTCTGAATGTGAACGAACTCCTGATAAGACAGCATCCGCCATTCTCTAATTCTCGTGCTGCTCTCCCGACAAAAATGCTAGCAGCACGCACACAGCTTTGCTGTATGATCGGCCCTGACAAGATCGCGGGGGAAAACATTCAACAAACCGCGTGGGTGATGGAAACAAACGCATATGAGCCTTCATGAACGGCTAAATACTGTGCCGTGGTTTCCGTGTCTCTCAGCTCGGGCTTGACACTGGCAGGTCTGGCAGGTCTCATGAATAATTAAGCAGCCGGCTCTTCTCATAGGATAAGAAAACTCTGCTATGAATAATAATGAGAAACCGACGTGTCATCATTGCACTTGCAGTTCTGCGCTACGTCGCCGATTTTGATCCCGCCCCAAAAATCGTTTTAAACCCGGAAGCTGAAATTAGCTGACGACAAGCTCAAAATTATCCAGTTTTCCCCACAATTAAAGCTGACAGGTGCTAACATTGTCTTAACTGATGCTCAACACACACACAGCTGTTAATATTTTTAAAAAAAAAGTTCTCCGGGGTGTCCTGAACCTTTAAATGTGACCCAATTTATATTTATATATATATAATTTTTTATTTTTTTATTGCAATCGTGATTTTGGAAAGTATTACTGCGCTTTGTAAACGTTTATTATTACCATATGATGAGTCTCCCCATACAGTTTGATAGAGCGCTTGGAATTAAATTAAATCTGCGAATATCAGGATGCTGTGTAGGTTATTAAATCTCGAAAAATCATGCTAAATTGGACATCATGCCACTGCTGGATTAGCATATGTATTCAGTTTATCAATGTTTCTTACAATCTGTATTTATTTAGCCAATATTTCCAGTTGAAACCTAAAGTGGTTATGAGGTGTTCAAAGACGGTCTTTATAAAGGTATTGTATTTTACTCACCAAAGCCATATCACAGTCCAAGACCGGTTACTCACTGAAGCTAAGCAGAGCTGAACCTGGGAGACCACTAGGGAACACTAGGTTACTGTTGGAAGTGTTGTTAGTGAGGCCAGCGGGGGGCGCTCAACCTGTGGTCTGTGGGACTCCCTATGCCCCAGTATAGTGAAGGGAACACTATACTGTCAGTGGGTGTCGTCTTTCGGATGAGACATTAAACCTGACTCTTTGTTGTCAGTAAAAATCCCATTGCACTGATCGTAAAGAGTAGGGGTGTAACATGGGTGTCCTGACCAAAGTCCCTCAATCGGCCCTTACAATCATGGCCTCCCAGTCCTCCCCATCCACCGAATTGGCTCCATCAGTGAGCGCACTGGCACCATTGTCCTGTGGCTGCCGTTGCATCATCCAAGTGGAGGCTGCACACTAGTGGTGGTGTGGAGAGACCCCCCCTCATGATTGTGAAGCACTTTGGGTGTATGGCCATACACAATTAATGCACTATATAAATACACATTACATAACTCTCTGGTTCCTGTATATACTCTGATATACTACTGTAAGAATTTGGTTGAGGACAGTGGTAGGGAACCTATGGCTTGCAAACCACATGTGGCTCTTTGACCAAAAACAATGCGCGGCACTGAATTGCGTCACCAATAAAGGACAAACTACTTATTTTTCTATGGCAACCTCATGCACACAACATTCATCAGTGGTGATGGAAAATAAAATAAAAAAATCTGTAAATTGTCCTTTCTTCATTCATGGACTCATGTTTGTTTATTTTTGAATTGTGCATTGACATAAATACAGGTTTTGTTTAAACCTTTATAGCAATATATCTATATAATTAACTTTTCTTCTTTAGGAATAAAATATAAGTATTTTATTTTCTGTCATTGCAG
Seq C2 exon
CATTCGCATGGGGAGGTTTCTCGGCCTGTGTGGCTGCAGGCTGCAGAGTCGGCCTACAGGTTCACTCTGGGCTCCATCGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102362:ENSDART00000167753:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(15.2=51.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]