GgaINT0049672 @ galGal4
Intron Retention
Gene
ENSGALG00000009545 | SLC25A12
Description
solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:HGNC Symbol;Acc:HGNC:10982]
Coordinates
chr7:17436357-17439689:+
Coord C1 exon
chr7:17436357-17436441
Coord A exon
chr7:17436442-17439604
Coord C2 exon
chr7:17439605-17439689
Length
3163 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCCCTTTCTTCCTCACACAGCAA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCGCTTAACTTTGGCAGATATTGAGAGAGTAGCACCTTTAGCTGAGGGTGCATTACCGTACAACTTGGCAGAACTCCAGAGGCAG
Seq A exon
GTAGGTAAAAGTGGTATATACAATCAAAATTGCTGAAATTAAGTGAATGTTTACGTGTACATGTGTATGAAAAGTTAAAAACAAAAATACTTGAAACAGATTCTTAACAAATGGGTCATGTTGTATGTGTACTGCTATAAAGATAGAAATAGGATAGTACTGAGTAAGCAATTCACCTGTGCAACCCTGGGTTCACCCCTCCCTCAGTTAAGGGCTGGCGGCCAAAAGAGAAGCATCTCTATTTGGAGATTGCCTCCTTTTAGAATTTCCAACAAGCCCTGATCTTTGGAAAGGAGTAAGCTATTCCTTCTTTGTTACTGAATTGTGAATGCTACCTTTCTTGAGTGATCAGAAACTAGCTAAAGGCAACTATACCTACTGCCCCCTATTATTACAGTAAGTTTGTTCTTTTCCACTTCACTTTTTGTACATGTTACAGTGAAGTTCCTTTAAGAGATTGTATCCACTGGATTATGTAGGATCTGTGATAAGACAAGAATGGTGGAATGAGTTGATGCAGAAATGTGTATGCAATGTTTGTCCAGACTAACGAGAAGTACTTTTGCTGAAGTTTCATAATTGCATTTGTAACTGTCATTGTTGGTTTTAATCAGTGTTTTCTGTAGCACTCAGCTTTCTGAGTAGACTATTAGGAAATAAAATACTTACCTATTTTATTTTACACCTCAGAATTACCTTTGTAGCTTAACACTGTTATAAAATGAGCTCACTGAAAAAAGCTTCACCCATCACTAGAATGTACTCTTTTAATGCTCTTGGAGTAATATAGCATGCTTTAACCCTATTCTATATTCTGTATTAAGAGAGCACAGCAAAAAGGAAGCAATTTTGTTTTCTCTCTTCTGTAAGGAACAGTCTTTTACTGGACCATATCCTAAGTGAACCTGTTATTACTTAATTTAACAGTACTGATAGATGCAGCAAAAAAGTTTTGTTTGTGGTAGAGATAATATCATTGCTGTGAGGTCCATCCACCGCTGGAAAATGAAAACACTTCCCTAATTGCATTTATATGGCAATGTACATAAACTTGCTCTTTGTGGGTTTGGTGGAAATGGAAAGTAGCTTGCTTTCAACAATGTTTACTTTATTGTCAATTTTTTTCATTGTGTGGGATTTTCCTAAAGCCCGGCAAGTGAATATCCTGTAGGGATGACAGATACAGTAATTTTCTGTTTATAAATATTAATGTTTTGAAAGCTATAGCATTAATTACATTCATTTGCATATTCAGCTGAACACACAAGTAAACTACAAACTTTGTGAACAGTTATTAAATAATATAAAAAGTGACAATTCCTTCACAAAGAATTTGATTCTTAACATCCAGTGATGTATTCATTAGGAATTATATTGGAATGTAGTGATTGGACTTTGATGAGAACTCTGTAGAGCTTCGAGTAGAAGGAATAACCTTAAAAAGCTAAGAGGAACCAAGTGTGATAATGTAGGACAAAAATTCTGTACAGTGAAAAACCAGTGCCCTTTCAGAGTCTTTCAGTGTGTTGTTACTGCATATGTCTTTTATTGAAATGGATCAAAAGGTCCCTCTGTATTTTGCAGGGTTTTGTTTTGTTTTGTTTTTGTGACCATCTTGTTTTTATTGTGATTCTCATTAAAATCAGGAAAGCTTAAAGTTTTCAGAATAGTGACTGAACTCTTCAGATTTGTTGTTTCTCTTTGCTTGTAAAGGCAATTCATTTGATCTATGCTTGTTTGTTTTGTTTTTTTTTTTAATAGACTGTTCCACACGTGTACTTTGTACTTCTTGTGACCCAGAATTTTTCTGTTCTTTTCTGCTCAGCTGTATTTTTGGAGAAGAAAATGCCTTGTGGAGGGAAATGATGGCACCTGGGTGTTTTTTTTTTGTTTTGTTTTGTTTTTGATTTTTTTAGGAAATTTGTACAAAATACTTTTTTTTTCCTTTTTTACAAATAAGGATCCCATCTTAACCTCAGAGGCCTTTGTGTTCTTCCTTGTGTACATACTGTGTAGCGTCACATCTTAAAGGCAGGGTTTTGCACATGCAGTGTCATGCCAGCATAAGCAGGGTTGCTTACACTGAGGTATGTGCTGCCCTTCTGTGGATGTTCCACGATTCAGAGCTTTGGAAAGCCTGGTGTAAATGTTAGCAGTGAAACATCTGTGTGATGTTCTTTGTAGAGAATACATAATGTGCATCAGAGCGAAGCACTGTAGAGTTCTGAGGTCTGTATAAATCCCAGCTCTGCACTCACAAGTGCATCTGCAAATGATACAGGTTATCTGTAAAGAACAAAGGAGGCTGCTTTTGGGAGATGGGCTTTGGTATCTGCTTTAGTGTGGATTTTAACCTCTAGTATTTTGGCCACCTATTACCTACATCGTATAAATTCTTTTCTAACACCCTTAGTTATGTTTGGAAGAAAACTTGGCATACTGTACTATGCCAGTTTCTGAATCTTTACATCTTGTGTATCAGCTTATCTTTATTACCTTATATGTAGTAAACATCTAATAATGTGATTTTGAATCTCTGCAAATATTTGGTGTAGACTTGGTTTTTATTTAAAATCCTAACATGTTTATAATAGTGTATGTGATTGAAATTAGTGAGGTCATCGTTGTGTCTGCAAATCATCAGCTGTCTGATAGAGCTTTGTGAGGAATGCTCTGGGAAATAATTGGCATTTTTTGCTTGTTTTGAAGGTAGTAGATGTCATGTTTATTCTATGTAGTAATGTGTATATACAGTCTTAGCATCTACCATCAGAGTATACATCTTATCTGTCAGATACTGAATTTTGTTTAAGCTAAGAAGGGGTTTCCGTTCCTTGGCAGTTTGAAGGCAATAGGATGAGAAATAGCAAAGTTGATTTATATTTCTATCTACTTTATCTTGACCATAGATGGTTGGCTTTATTTTGCGATACCAGGAATGAAAATACCAGGAATGTAAGAATATGGCTATAAGGAGTATTTGAAAAACATGCTTTGTTCAGTTGATGTCTTGGAACTTAGAAATTCTTTTTTTTTCCCTCCTTGATGTAATACCACACGTTTTTGTCAGAATCTTTGTTTAACTTCATGAAAGCAGATTTATATTGTCTTTGTTCTCCCAGCAAAGTTTTGAAATGTTTTTTTCCCTTTCTTCCTCACACAG
Seq C2 exon
CAATCGTTTGGAGAGTTAAGCAGGCCTATCTGGCTCCAGGTAGCTGAGTCAGCCTACAGGTTCACTTTGGGCTCAATTGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009545:ENSGALT00000015535:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(15.2=51.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]